Made some changes that allow typings and e2e types to be read correctly.

addon/ng2/blueprints/ng2/files/__path__/tsconfig.json

@@ -1,6 +1,6 @@
 {
   "compilerOptions": {
-    "baseUrl": ".",
+    "baseUrl":"./src",
     "declaration": false,
     "emitDecoratorMetadata": true,
     "experimentalDecorators": true,
@@ -9,15 +9,15 @@
     "moduleResolution": "node",
     "outDir": "./dist/",
     "rootDir": ".",
-    "mapRoot": "/",
-    "sourceMap": true,
-    "sourceRoot": "."
+    "sourceMap": true
   },
+  "compileOnSave": false,
+  "buildOnSave": false,
   "exclude": [
     "node_modules",
     "bower_components"
   ],
-  "files": [
-    "typings.d.ts"
+  "includes": [
+    "**.d.ts"
   ]
 }

addon/ng2/blueprints/ng2/files/e2e/typings.d.ts

@@ -1 +1 @@
-/// <reference path="../typings/main.d.ts" />
+/// <reference path="../typings/index.d.ts" />

addon/ng2/models/webpack-build-common.ts

@@ -18,8 +18,7 @@ export const getWebpackCommonConfig = function(projectRoot: string) {
     resolve: {
       extensions: ['', '.ts', '.js'],
       root: path.resolve(projectRoot, './src'),
-      plugins: [
-      ]
+      moduleDirectories: ['node_modules']
     },
     context: path.resolve(__dirname, './'),
     entry: {

package.json

@@ -36,7 +36,7 @@
     "@types/rimraf": "0.0.25-alpha",
     "@types/webpack": "^1.12.22-alpha",
     "angular2-template-loader": "^0.4.0",
-    "awesome-typescript-loader": "1.1.1",
+    "awesome-typescript-loader": "^2.0.1",
     "chalk": "^1.1.3",
     "compression-webpack-plugin": "^0.3.1",
     "copy-webpack-plugin": "^3.0.1",
@@ -97,7 +97,7 @@
     "typescript": "^2.0.0",
     "typings": "^0.8.1",
     "url-loader": "^0.5.7",
-    "webpack": "2.1.0-beta.15",
+    "webpack": "2.1.0-beta.17",
     "webpack-dev-server": "^1.14.1",
     "webpack-md5-hash": "0.0.5",
     "webpack-merge": "^0.14.0"