Make row sum normalization optional for pixel-level Pixie preprocessing #1140
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
What is the purpose of this PR?
@kxleow would like to verify if turning off row sum normalization will help with running a MALDI slide through Pixie.
How did you implement your changes
Add a flag
rowsum_norm
that defaults toTrue
but can be set toFalse
in the notebook.Remaining issues
This feature will not be merged if the results end up looking worse.