Merge branch 'master' into mc-config-refactor-numba

.github/actions/setup_lfs/action.yml

@@ -0,0 +1,97 @@
+name: 'Setup LFS'
+description: 'Pull LFS repositories and caches them'
+
+inputs:
+  refdata-repo:
+    description: "tardis refdata repository"
+    required: false
+    default: 'tardis-sn/tardis-refdata'
+  regression-data-repo: 
+    description: "tardis regression data repository"
+    required: false
+    default: 'tardis-sn/tardis-regression-data'
+
+runs:
+    using: "composite"
+    steps:
+      - uses: actions/checkout@v4
+      - name: Clone Refdata Repo
+        uses: actions/checkout@v4
+        with:
+          repository: ${{ inputs.refdata-repo }}
+          path: tardis-refdata
+          lfs: false
+
+      - name: Create LFS file list
+        run: git lfs ls-files -l | cut -d' ' -f1 | sort > .lfs-assets-id
+        working-directory: tardis-refdata
+        shell: bash
+
+      - name: Restore LFS cache
+        uses: actions/cache/restore@v3
+        id: lfs-cache-refdata
+        with:
+          path: tardis-refdata/.git/lfs
+          key: ${{ runner.os }}-lfs-${{ hashFiles('tardis-refdata/.lfs-assets-id') }}-v1
+
+      - name: Git LFS Pull
+        run: git lfs pull
+        working-directory: tardis-refdata
+        if: steps.lfs-cache-refdata.outputs.cache-hit != 'true'
+        shell: bash
+
+      - name: Git LFS Checkout
+        run: git lfs checkout
+        working-directory: tardis-refdata
+        if: steps.lfs-cache-refdata.outputs.cache-hit == 'true'
+        shell: bash
+
+      - name: Save LFS cache if not found
+        # uses fake ternary 
+        # for reference: https://github.com/orgs/community/discussions/26738#discussioncomment-3253176
+        if: ${{ steps.lfs-cache-refdata.outputs.cache-hit != 'true'  && always() || false }}
+        uses: actions/cache/save@v3
+        id: lfs-cache-refdata-save
+        with:
+          path: tardis-refdata/.git/lfs
+          key: ${{ runner.os }}-lfs-${{ hashFiles('tardis-refdata/.lfs-assets-id') }}-v1
+
+      - name: Clone tardis-sn/tardis-regression-data
+        uses: actions/checkout@v4
+        with:
+          repository:  ${{ inputs.regression-data-repo }}
+          path: tardis-regression-data
+
+      - name: Create LFS file list
+        run: git lfs ls-files -l | cut -d' ' -f1 | sort > .lfs-assets-id
+        working-directory: tardis-regression-data
+        shell: bash
+
+      - name: Restore LFS cache
+        uses: actions/cache/restore@v3
+        id: lfs-cache-regression-data
+        with:
+          path: tardis-regression-data/.git/lfs
+          key: ${{ runner.os }}-lfs-${{ hashFiles('tardis-regression-data/.lfs-assets-id') }}-v1
+
+      - name: Git LFS Pull
+        run: git lfs pull
+        working-directory: tardis-regression-data
+        if: steps.lfs-cache-regression-data.outputs.cache-hit != 'true'
+        shell: bash
+
+      - name: Git LFS Checkout
+        run: git lfs checkout
+        working-directory: tardis-regression-data
+        if: steps.lfs-cache-regression-data.outputs.cache-hit == 'true'
+        shell: bash
+
+      - name: Save LFS cache if not found
+        # uses fake ternary 
+        # for reference: https://github.com/orgs/community/discussions/26738#discussioncomment-3253176
+        if: ${{ steps.lfs-cache-regression-data.outputs.cache-hit != 'true'  && always() || false }}
+        uses: actions/cache/save@v3
+        id: lfs-cache-regression-data-save
+        with:
+          path: tardis-regression-data/.git/lfs
+          key: ${{ runner.os }}-lfs-${{ hashFiles('tardis-regression-data/.lfs-assets-id') }}-v1

.github/workflows/benchmarks.yml

@@ -26,10 +26,11 @@ defaults:
 
 jobs:
   build:
-    if: github.event_name == 'push' ||
+    if: github.repository_owner == 'tardis-sn' &&
+        (github.event_name == 'push' ||
         github.event_name == 'workflow_dispatch' || 
         (github.event_name == 'pull_request_target' &&
-        contains(github.event.pull_request.labels.*.name, 'benchmarks'))
+        contains(github.event.pull_request.labels.*.name, 'benchmarks')))
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3

.github/workflows/build-docs.yml

@@ -55,23 +55,20 @@ jobs:
           ref: ${{ github.event.pull_request.head.sha }}
         if: github.event_name == 'pull_request_target'
 
-      - name: Setup environment
-        uses: conda-incubator/setup-miniconda@v2
+      - name: Generate Cache Key
+        run: | 
+          file_hash=$(cat conda-linux-64.lock | shasum -a 256 | cut -d' ' -f1)
+          echo "file_hash=$file_hash" >> "${GITHUB_OUTPUT}"
+        id: cache-environment-key
+
+      - uses: mamba-org/setup-micromamba@v1
         with:
-            miniforge-variant: Mambaforge
-            miniforge-version: latest
-            activate-environment: tardis
-            use-mamba: true
-
-      - uses: actions/cache@v2
-        with:
-          path: /usr/share/miniconda3/envs/tardis
-          key: conda-linux-64-${{ hashFiles('conda-linux-64.lock') }}-${{ env.CACHE_NUMBER }}
-        id: cache-conda
-
-      - name: Update environment
-        run: mamba update -n tardis --file conda-linux-64.lock
-        if: steps.cache-conda.outputs.cache-hit != 'true'
+          environment-file: conda-linux-64.lock
+          cache-environment-key: ${{ steps.cache-environment-key.outputs.file_hash }}
+          cache-downloads-key: ${{ steps.cache-environment-key.outputs.file_hash }}
+          environment-name: tardis
+          cache-environment: true
+          cache-downloads: true
 
       - name: Install package
         run: pip install -e .

.github/workflows/codestyle.yml

@@ -7,11 +7,11 @@ name: codestyle
 on:
   push:
     branches:
-    - '*'
+      - "*"
 
   pull_request:
     branches:
-    - '*'
+      - "*"
 
 jobs:
   black:
@@ -29,20 +29,3 @@ jobs:
 
       - name: Run Black
         run: black --check tardis
-
-  flake8:
-    if: false
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Setup Python
-        uses: actions/setup-python@v2
-        with:
-          python-version: 3.x
-
-      - name: Install Flake8
-        run: pip install flake8==4.0.1 pep8-naming==0.12.1
-
-      - name: Run Flake8
-        run: flake8 tardis