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SCRUM-4305 set obsolete / internal variables explicitly when being up…
…dated. (#1629)
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src/main/java/org/alliancegenome/curation_api/services/helpers/UniqueIdentifierHelper.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,72 @@ | ||
| package org.alliancegenome.curation_api.services.helpers; | ||
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| import org.alliancegenome.curation_api.model.entities.Annotation; | ||
| import org.alliancegenome.curation_api.model.entities.base.AuditedObject; | ||
| import org.alliancegenome.curation_api.model.entities.base.SubmittedObject; | ||
| import org.alliancegenome.curation_api.model.ingest.dto.AnnotationDTO; | ||
| import org.alliancegenome.curation_api.model.ingest.dto.DiseaseAnnotationDTO; | ||
| import org.alliancegenome.curation_api.model.ingest.dto.base.SubmittedObjectDTO; | ||
| import org.apache.commons.lang3.StringUtils; | ||
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| public class UniqueIdentifierHelper { | ||
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| public static <E extends AnnotationDTO> String getIdentifyingField(E annotationDTO) { | ||
| if (StringUtils.isNotBlank(annotationDTO.getModEntityId())) { | ||
| return "modEntityId"; | ||
| } else if (StringUtils.isNotBlank(annotationDTO.getModInternalId())) { | ||
| return "modInternalId"; | ||
| } else { | ||
| return "uniqueId"; | ||
| } | ||
| } | ||
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| public static void setObsoleteAndInternal(DiseaseAnnotationDTO dto, AuditedObject annotation) { | ||
| // default obsolete value: false | ||
| annotation.setObsolete(dto.getObsolete() != null && dto.getObsolete()); | ||
| // default internal value: false | ||
| annotation.setInternal(dto.getInternal() != null && dto.getInternal()); | ||
| } | ||
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| public static <E extends AnnotationDTO, F extends Annotation> String setAnnotationID(E annotationDTO, F annotation, String uniqueId) { | ||
| if (StringUtils.isNotBlank(annotationDTO.getModEntityId())) { | ||
| annotation.setModEntityId(annotationDTO.getModEntityId()); | ||
| return annotationDTO.getModEntityId(); | ||
| } else if (StringUtils.isNotBlank(annotationDTO.getModInternalId())) { | ||
| annotation.setModInternalId(annotationDTO.getModInternalId()); | ||
| return annotationDTO.getModInternalId(); | ||
| } else { | ||
| return uniqueId; | ||
| } | ||
| } | ||
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| public static <E extends SubmittedObjectDTO> String getIdentifyingField(E submittedObjectDto) { | ||
| if (StringUtils.isNotBlank(submittedObjectDto.getModEntityId())) { | ||
| return "modEntityId"; | ||
| } else if (StringUtils.isNotBlank(submittedObjectDto.getModInternalId())) { | ||
| return "modInternalId"; | ||
| } else { | ||
| return "uniqueId"; | ||
| } | ||
| } | ||
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| public static void setObsoleteAndInternal(SubmittedObjectDTO dto, SubmittedObject submittedObject) { | ||
| // default obsolete value: false | ||
| submittedObject.setObsolete(dto.getObsolete() != null && dto.getObsolete()); | ||
| // default internal value: false | ||
| submittedObject.setInternal(dto.getInternal() != null && dto.getInternal()); | ||
| } | ||
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| public static <E extends SubmittedObjectDTO, F extends SubmittedObject> String setAnnotationID(E submittedObjectDTO, F submittedObject, String uniqueId) { | ||
| if (StringUtils.isNotBlank(submittedObjectDTO.getModEntityId())) { | ||
| submittedObject.setModEntityId(submittedObjectDTO.getModEntityId()); | ||
| return submittedObjectDTO.getModEntityId(); | ||
| } else if (StringUtils.isNotBlank(submittedObjectDTO.getModInternalId())) { | ||
| submittedObject.setModInternalId(submittedObjectDTO.getModInternalId()); | ||
| return submittedObjectDTO.getModInternalId(); | ||
| } else { | ||
| return uniqueId; | ||
| } | ||
| } | ||
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| } |
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