undo changes

alliance-genome · Dec 3, 2024 · 68fce1e · 68fce1e
1 parent 7df499e
commit 68fce1e
Showing 1 changed file with 29 additions and 21 deletions.
diff --git a/src/main/java/org/alliancegenome/curation_api/model/entities/Construct.java b/src/main/java/org/alliancegenome/curation_api/model/entities/Construct.java
@@ -1,11 +1,7 @@
 package org.alliancegenome.curation_api.model.entities;
 
-import com.fasterxml.jackson.annotation.JsonManagedReference;
-import com.fasterxml.jackson.annotation.JsonView;
-import jakarta.persistence.*;
-import lombok.Data;
-import lombok.EqualsAndHashCode;
-import lombok.ToString;
+import java.util.List;
+
 import org.alliancegenome.curation_api.constants.LinkMLSchemaConstants;
 import org.alliancegenome.curation_api.interfaces.AGRCurationSchemaVersion;
 import org.alliancegenome.curation_api.model.entities.associations.constructAssociations.ConstructGenomicEntityAssociation;
@@ -20,59 +16,71 @@
 import org.hibernate.search.mapper.pojo.mapping.definition.annotation.IndexedEmbedded;
 import org.hibernate.search.mapper.pojo.mapping.definition.annotation.IndexingDependency;
 
-import java.util.List;
+import com.fasterxml.jackson.annotation.JsonManagedReference;
+import com.fasterxml.jackson.annotation.JsonView;
+
+import jakarta.persistence.CascadeType;
+import jakarta.persistence.Entity;
+import jakarta.persistence.Index;
+import jakarta.persistence.JoinTable;
+import jakarta.persistence.ManyToMany;
+import jakarta.persistence.OneToMany;
+import jakarta.persistence.OneToOne;
+import lombok.Data;
+import lombok.EqualsAndHashCode;
+import lombok.ToString;
 
 @Indexed
 @Entity
 @Data
 @EqualsAndHashCode(onlyExplicitlyIncluded = true, callSuper = true)
 @Schema(name = "construct", description = "POJO that represents a construct")
 @ToString(exclude = {"constructGenomicEntityAssociations", "constructComponents", "constructSymbol", "constructFullName", "constructSynonyms"}, callSuper = true)
-@AGRCurationSchemaVersion(min = "2.1.0", max = LinkMLSchemaConstants.LATEST_RELEASE, dependencies = {Reagent.class})
+@AGRCurationSchemaVersion(min = "2.1.0", max = LinkMLSchemaConstants.LATEST_RELEASE, dependencies = { Reagent.class })
 
 public class Construct extends Reagent {
 
-	@IndexedEmbedded(includePaths = {"displayText", "formatText", "nameType.name", "synonymScope.name", "evidence.curie", "displayText_keyword", "formatText_keyword", "nameType.name_keyword", "synonymScope.name_keyword", "evidence.curie_keyword"})
+	@IndexedEmbedded(includePaths = { "displayText", "formatText", "nameType.name", "synonymScope.name", "evidence.curie", "displayText_keyword", "formatText_keyword", "nameType.name_keyword", "synonymScope.name_keyword", "evidence.curie_keyword"})
 	@OneToOne(mappedBy = "singleConstruct", cascade = CascadeType.ALL, orphanRemoval = true)
 	@JsonManagedReference
-	@JsonView({View.FieldsOnly.class})
+	@JsonView({ View.FieldsOnly.class })
 	private ConstructSymbolSlotAnnotation constructSymbol;
 
-	@IndexedEmbedded(includePaths = {"displayText", "formatText", "nameType.name", "synonymScope.name", "evidence.curie", "displayText_keyword", "formatText_keyword", "nameType.name_keyword", "synonymScope.name_keyword", "evidence.curie_keyword"})
+	@IndexedEmbedded(includePaths = { "displayText", "formatText", "nameType.name", "synonymScope.name", "evidence.curie", "displayText_keyword", "formatText_keyword", "nameType.name_keyword", "synonymScope.name_keyword", "evidence.curie_keyword"})
 	@OneToOne(mappedBy = "singleConstruct", cascade = CascadeType.ALL, orphanRemoval = true)
 	@JsonManagedReference
-	@JsonView({View.FieldsOnly.class})
+	@JsonView({ View.FieldsOnly.class })
 	private ConstructFullNameSlotAnnotation constructFullName;
-
-	@IndexedEmbedded(includePaths = {"displayText", "formatText", "nameType.name", "synonymScope.name", "evidence.curie", "displayText_keyword", "formatText_keyword", "nameType.name_keyword", "synonymScope.name_keyword", "evidence.curie_keyword"})
+	
+	@IndexedEmbedded(includePaths = { "displayText", "formatText", "nameType.name", "synonymScope.name", "evidence.curie", "displayText_keyword", "formatText_keyword", "nameType.name_keyword", "synonymScope.name_keyword", "evidence.curie_keyword"})
 	@OneToMany(mappedBy = "singleConstruct", cascade = CascadeType.ALL, orphanRemoval = true)
 	@JsonManagedReference
-	@JsonView({View.FieldsAndLists.class, View.ConstructView.class})
+	@JsonView({ View.FieldsAndLists.class, View.ConstructView.class })
 	private List<ConstructSynonymSlotAnnotation> constructSynonyms;
 
 	@IndexedEmbedded(includeDepth = 2)
 	@IndexingDependency(reindexOnUpdate = ReindexOnUpdate.SHALLOW)
 	@ManyToMany
-	@JsonView({View.FieldsAndLists.class, View.ConstructView.class})
+	@JsonView({ View.FieldsAndLists.class, View.ConstructView.class })
 	@JoinTable(indexes = {
 		@Index(name = "construct_reference_construct_index", columnList = "construct_id"),
 		@Index(name = "construct_reference_references_index", columnList = "references_id")
 	})
 	private List<Reference> references;
-
-	@IndexedEmbedded(includePaths = {"relation.name", "relation.name_keyword", "componentSymbol", "taxon.curie", "taxonText", "componentSymbol_keyword", "taxon.curie_keyword", "taxonText_keyword"})
+	
+	@IndexedEmbedded(includePaths = { "relation.name", "relation.name_keyword", "componentSymbol", "taxon.curie", "taxonText", "componentSymbol_keyword", "taxon.curie_keyword", "taxonText_keyword"})
 	@OneToMany(mappedBy = "singleConstruct", cascade = CascadeType.ALL, orphanRemoval = true)
 	@JsonManagedReference
-	@JsonView({View.FieldsAndLists.class, View.ConstructView.class})
+	@JsonView({ View.FieldsAndLists.class, View.ConstructView.class })
 	private List<ConstructComponentSlotAnnotation> constructComponents;
-
+	
 	@IndexedEmbedded(includePaths = {
 		"constructGenomicEntityAssociationObject.curie", "constructGenomicEntityAssociationObject.modEntityId", "constructGenomicEntityAssociationObject.modInternalId",
 		"constructGenomicEntityAssociationObject.name", "constructGenomicEntityAssociationObject.symbol", "relation.name", "constructGenomicEntityAssociationObject.curie_keyword",
 		"constructGenomicEntityAssociationObject.modEntityId_keyword", "constructGenomicEntityAssociationObject.modInternalId_keyword", "constructGenomicEntityAssociationObject.name_keyword",
 		"constructGenomicEntityAssociationObject.symbol_keyword", "relation.name_keyword"
 	})
 	@OneToMany(mappedBy = "constructAssociationSubject", cascade = CascadeType.ALL, orphanRemoval = true)
-	@JsonView({View.FieldsAndLists.class, View.ConstructView.class})
+	@JsonView({ View.FieldsAndLists.class, View.ConstructView.class })
 	private List<ConstructGenomicEntityAssociation> constructGenomicEntityAssociations;
 }