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SCRUM-4442 (update) Handle amino acids for synonymous variants #3779

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Job	Run time
Integration Test API	8m 7s
Check Branching Rules	5s
Checkstyle API	36s
Package API	2m 22s
Test API	1m 32s
Test Build Docker Image	3m 45s
Verify API	2m 2s
Verify Test UI	2m 19s
	20m 48s