Fix label mask tensor created by NumpyPaddedFSLDataset
#386
Workflow file for this run
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| name: Main | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - 'v*.*.*' | |
| env: | |
| # Change this to invalidate existing cache. | |
| CACHE_PREFIX: v0 | |
| PYTHONPATH: ./src/ | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| BEAKER_TOKEN: ${{ secrets.BEAKER_TOKEN }} | |
| jobs: | |
| checks: | |
| name: ${{ matrix.task.name }} | |
| runs-on: [ubuntu-latest] | |
| timeout-minutes: 5 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python: ['3.10'] | |
| task: | |
| - name: Lint | |
| run: make lint-check | |
| - name: Test | |
| run: | | |
| pytest -v --color=yes --durations=3 src/test/ \ | |
| --ignore-glob='src/test/distributed/checkpoint*' | |
| - name: Test checkpoint | |
| run: | | |
| pytest -v --color=yes --durations=3 src/test/distributed/checkpoint* | |
| - name: Type check | |
| run: make type-check | |
| - name: Build | |
| run: make build | |
| - name: Style | |
| run: make style-check | |
| - name: Docs | |
| run: | | |
| cd docs && make html SPHINXOPTS="-W --keep-going" | |
| include: | |
| - python: '3.9' | |
| task: | |
| name: Lint (min Python) | |
| run: make lint-check | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Python environment | |
| uses: ./.github/actions/setup-venv | |
| with: | |
| python-version: ${{ matrix.python }} | |
| cache-prefix: ${{ env.CACHE_PREFIX }} | |
| - name: Restore mypy cache | |
| if: matrix.task.name == 'Type check' | |
| uses: actions/cache@v3 | |
| with: | |
| path: .mypy_cache | |
| key: mypy-${{ env.CACHE_PREFIX }}-${{ runner.os }}-${{ matrix.python }}-${{ hashFiles('pyproject.toml') }}-${{ github.ref }}-${{ github.sha }} | |
| restore-keys: | | |
| mypy-${{ env.CACHE_PREFIX }}-${{ runner.os }}-${{ matrix.python }}-${{ hashFiles('pyproject.toml') }}-${{ github.ref }} | |
| mypy-${{ env.CACHE_PREFIX }}-${{ runner.os }}-${{ matrix.python }}-${{ hashFiles('pyproject.toml') }} | |
| - name: ${{ matrix.task.name }} | |
| run: | | |
| . .venv/bin/activate | |
| ${{ matrix.task.run }} | |
| - name: Upload package distribution files | |
| if: matrix.task.name == 'Build' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: package | |
| path: dist | |
| - name: Clean up | |
| if: always() | |
| run: | | |
| . .venv/bin/activate | |
| pip uninstall -y ai2-olmo-core | |
| gpu_checks: | |
| name: ${{ matrix.task.name }} | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 8 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| task: | |
| - name: Test (GPU) | |
| run: pytest -v --color=yes --durations=3 -m gpu src/test/ --ignore-glob='src/test/distributed/checkpoint*' | |
| - name: Test checkpoint (GPU) | |
| run: pytest -v --color=yes --durations=3 -m gpu src/test/distributed/checkpoint* | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| - name: Set env vars | |
| run: | | |
| echo "BEAKER_WORKSPACE=$(make get-beaker-workspace)" >> $GITHUB_ENV | |
| - name: Determine current commit SHA (pull request) | |
| if: github.event_name == 'pull_request' | |
| run: | | |
| echo "COMMIT_SHA=${{ github.event.pull_request.head.sha }}" >> $GITHUB_ENV | |
| - name: Determine current commit SHA (push) | |
| if: github.event_name != 'pull_request' | |
| run: | | |
| echo "COMMIT_SHA=$GITHUB_SHA" >> $GITHUB_ENV | |
| - uses: allenai/setup-beaker@v2 | |
| if: env.BEAKER_TOKEN != '' | |
| with: | |
| token: ${{ env.BEAKER_TOKEN }} | |
| workspace: ${{ env.BEAKER_WORKSPACE }} | |
| - name: Get full image name | |
| if: env.BEAKER_TOKEN != '' | |
| run: | |
| echo "BEAKER_IMAGE=$(make get-full-beaker-image-name)" >> $GITHUB_ENV | |
| - name: GPU Tests | |
| uses: allenai/[email protected] | |
| if: env.BEAKER_TOKEN != '' | |
| with: | |
| spec: | | |
| version: v2 | |
| description: OLMo-core ${{ matrix.task.name }} | |
| budget: ai2/oe-training | |
| tasks: | |
| - name: tests | |
| image: | |
| beaker: ${{ env.BEAKER_IMAGE }} | |
| context: | |
| priority: low | |
| preemptible: true | |
| resources: | |
| gpuCount: 2 | |
| constraints: | |
| cluster: | |
| - ai2/allennlp-cirrascale | |
| - ai2/allennlp-elanding-a100-40g | |
| - ai2/pluto-cirrascale | |
| - ai2/jupiter-cirrascale-2 | |
| envVars: | |
| - name: CUBLAS_WORKSPACE_CONFIG | |
| value: ":16:8" | |
| - name: TOKENIZERS_PARALLELISM | |
| value: "false" | |
| - name: AWS_ACCESS_KEY_ID | |
| secret: AWS_ACCESS_KEY_ID | |
| - name: AWS_SECRET_ACCESS_KEY | |
| secret: AWS_SECRET_ACCESS_KEY | |
| command: | |
| - "bash" | |
| - "-c" | |
| - "git clone https://github.com/allenai/OLMo-core.git && cd OLMo-core && git checkout ${{ env.COMMIT_SHA }} && pip install -e .[all] && ${{ matrix.task.run }}" | |
| result: | |
| path: /unused | |
| token: ${{ env.BEAKER_TOKEN }} | |
| workspace: ${{ env.BEAKER_WORKSPACE }} | |
| release: | |
| name: Release | |
| runs-on: ubuntu-latest | |
| needs: [checks] | |
| if: startsWith(github.ref, 'refs/tags/') | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Python environment | |
| uses: ./.github/actions/setup-venv | |
| with: | |
| python-version: '3.10' | |
| cache-prefix: ${{ env.CACHE_PREFIX }} | |
| - name: Prepare environment | |
| run: | | |
| echo "RELEASE_VERSION=${GITHUB_REF#refs/tags/v}" >> $GITHUB_ENV | |
| echo "TAG=${GITHUB_REF#refs/tags/}" >> $GITHUB_ENV | |
| - name: Download package distribution files | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: package | |
| path: dist | |
| - name: Generate release notes | |
| run: | | |
| . .venv/bin/activate | |
| python src/scripts/release_notes.py > ${{ github.workspace }}-RELEASE_NOTES.md | |
| - name: Publish package to PyPI | |
| run: | | |
| . .venv/bin/activate | |
| twine upload -u __token__ -p '${{ secrets.PYPI_TOKEN }}' dist/* | |
| - name: Publish GitHub release | |
| uses: softprops/action-gh-release@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| body_path: ${{ github.workspace }}-RELEASE_NOTES.md | |
| prerelease: ${{ contains(env.TAG, 'rc') }} | |
| files: | | |
| dist/* |