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[DC-3660] Update Combined QC notebook to include CE #1838

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merged 2 commits into from
Jan 16, 2024
Merged

[DC-3660] Update Combined QC notebook to include CE #1838

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7f1626b
[DC-366-] Updated combined QC check.
ratuagga Dec 20, 2023
cfa4a9d
[DC-3660] Added comment
ratuagga Dec 21, 2023
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3 changes: 2 additions & 1 deletion data_steward/analytics/cdr_ops/combined.py
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Original file line number Diff line number Diff line change
Expand Up @@ -867,6 +867,7 @@ def verify_dataset_labels(dataset):
ext_tables = execute(client, ext_tables_query)
result = []
for _, row in ext_tables.iterrows():
# Only participant portal, EHR sites, and participant mediated EHR are allowed
tpl = JINJA_ENV.from_string("""
SELECT
\'{{table_name}}\' AS table_name,
Expand All @@ -875,7 +876,7 @@ def verify_dataset_labels(dataset):
FROM
`{{project_id}}.{{dataset}}.{{table_name}}`
WHERE NOT
REGEXP_CONTAINS(src_id, r'(?i)(Portal)|(EHR site)')
REGEXP_CONTAINS(src_id, r'(?i)(Portal)|(EHR)')
OR
src_id IS NULL
GROUP BY 1,2
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