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MaSuRCA 4.0.7
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@alekseyzimin alekseyzimin released this 13 Jan 21:25
· 30 commits to master since this release
v4.0.7
0285356

This release has significant improvements to SAMBA scaffolder, in error rates, output contiguity, and consensus quality. Since SAMBA now is part of default MaSuRCA assembly pipeline, the quality and contiguity of the MaSuRCA assemblies improves as well.
I also added assembly QV computation to POLCA, QV for the assembly is now reported in .report file, along with the other metrics. Note that POLCA polisher has -n option that allows it to run in "evaluation" mode where it outputs number or errors it detects in the assembly, but does not make any corrections. After that one can rerun the pipeline without -n switch to make corrections. Also -n option is useful for efficiently producing VCF file containing variant calls made by freebayes.

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