Using pre-commit with ruff

alanwilter · Oct 26, 2023 · 8448a9e · 8448a9e
1 parent 5613599
commit 8448a9e
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Showing 6 changed files with 10 additions and 5 deletions.
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -11,6 +11,7 @@ repos:
     rev: v0.1.2
     hooks:
       - id: ruff
+        args: [--fix]
   - repo: https://github.com/astral-sh/ruff-pre-commit
     rev: v0.1.2
     hooks:

diff --git a/README.md b/README.md
@@ -12,6 +12,7 @@
 [![PyPI](https://img.shields.io/pypi/v/acpype?style=plastic&logo=pypi)](https://pypi.org/project/acpype/)
 [![PyPI - Downloads](https://img.shields.io/pypi/dm/acpype?style=plastic&logo=pypi)](https://pypi.org/project/acpype/#files)
 ![GitHub Workflow Status (with event)](https://img.shields.io/github/actions/workflow/status/alanwilter/acpype/.github%2Fworkflows%2Fcheck_acpype.yml?style=plastic)
+[![Poetry](https://img.shields.io/endpoint?style=plastic&url=https://python-poetry.org/badge/v0.json)](https://python-poetry.org/)
 [![pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white&style=plastic)](https://github.com/pre-commit/pre-commit)
 [![Commits since release](https://img.shields.io/github/commits-since/alanwilter/acpype/2023.10.25/master?style=plastic)](https://github.com/alanwilter/acpype/commits/master)
 [![Codecov](https://img.shields.io/codecov/c/github/alanwilter/acpype?style=plastic)](https://app.codecov.io/gh/alanwilter/acpype)

diff --git a/acpype/amber_macos/dat/leap/parm/validate_torsions.py b/acpype/amber_macos/dat/leap/parm/validate_torsions.py
@@ -4,9 +4,10 @@
 override generic torsions
 """
 import os
-import parmed as pmd
 import sys
 
+import parmed as pmd
+
 if len(sys.argv) < 2:
     sys.exit("%s <param_file> [<param_file> [<param_file> ...]]" % os.path.split(sys.argv[0])[1])
 

diff --git a/legacy/CcpnToAcpype.py b/legacy/CcpnToAcpype.py
@@ -6,8 +6,10 @@
 import traceback
 from shutil import rmtree
 
-from ccpnmr.format.converters import Mol2Format  # type: ignore
-from ccpnmr.format.converters import PdbFormat  # type: ignore
+from ccpnmr.format.converters import (
+    Mol2Format,  # type: ignore
+    PdbFormat,  # type: ignore
+)
 
 from acpype.cli import ACTopol, elapsedTime, header
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -51,7 +51,7 @@ sphinx = ">=6"
 [tool.ruff]
 target-version = "py38"
 line-length = 120
-extend-select = ["E501", "UP", "RUF"]
+extend-select = ["UP", "RUF", "I"] # "E501"
 ignore = ['UP036']
 
 [tool.pytest.ini_options]

diff --git a/update_macos_bins.sh b/update_macos_bins.sh
@@ -101,7 +101,7 @@ pre-commit run -a
 
 tree -d $destination
 
-find $destination | wc -l # 564 files, 16 dirs
+find $destination | wc -l # 584 files, 16 dirs
 # acpype/amber_linux
 # ├── bin
 # │   └── wrapped_progs