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Fix compiler error on older compilers #43

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Fix compiler error on older compilers #43

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cd78300
Testing cast fix
Jondeen Jun 15, 2016
fc84253
Fix rest cast
Jondeen Jun 15, 2016
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12 changes: 6 additions & 6 deletions src/methCall.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -663,8 +663,8 @@ int process_sam ( std::istream *fh, std::string &CpGfile, std::string &CHHfile,
{
if ( ( ( (int) quals[i] - offset ) < minqual ) || ( mcalls[i] == '.') ){ continue;}
std::string key; // initialize the hash key
if( strand == '+') { key = "F|"+ chr+"|"+std::to_string(start+i); }
else { key = "R|"+ chr+"|"+std::to_string(start+i); }
if( strand == '+') { key = "F|"+ chr+"|"+std::to_string(static_cast<long long>(start+i)); }
else { key = "R|"+ chr+"|"+std::to_string(static_cast<long long>(start+i)); }

process_call_string(mcalls,i,key, CGmethHash, nonCGmethHash, CHHmethHash, CHGmethHash);

Expand Down Expand Up @@ -921,8 +921,8 @@ int process_bam ( std::string &input, std::string &CpGfile, std::string &CHHfile
{
if ( ( ( (int) quals[i] - offset ) < minqual ) || ( mcalls[i] == '.') ){ continue;}
std::string key; // initialize the hash key
if( strand == '+') { key = "F|"+ chr+"|"+std::to_string(start+i); }
else { key = "R|"+ chr+"|"+std::to_string(start+i); }
if( strand == '+') { key = "F|"+ chr+"|"+std::to_string(static_cast<long long>(start+i)); }
else { key = "R|"+ chr+"|"+std::to_string(static_cast<long long>(start+i)); }

process_call_string(mcalls,i,key, CGmethHash, nonCGmethHash, CHHmethHash, CHGmethHash);

Expand Down Expand Up @@ -1100,8 +1100,8 @@ int process_single_bismark (std::istream *fh, std::string &CpGfile, std::string
//if last base is a C and it is a part of CCGG motif, don't call for meth
if( ( (gbases[i] == 'C') && (i==quals.length()) ) && ( gbases.substr(i-1,4) == "CCGG" ) ) { continue;}
std::string key; // initilaize the hash key
if( strand == '+') { key = "F|"+ chr+"|"+std::to_string(start+i); }
else { key = "R|"+ chr+"|"+std::to_string(start+i); }
if( strand == '+') { key = "F|"+ chr+"|"+std::to_string(static_cast<long long>(start+i)); }
else { key = "R|"+ chr+"|"+std::to_string(static_cast<long long>(start+i)); }

process_call_string(mcalls, i,key, CGmethHash, nonCGmethHash, CHHmethHash, CHGmethHash);

Expand Down