This repository contains the bioinformatic pipelines and R scripts used to process and analyse norovirus MiSeq amplicon High Throughput Sequencing data. The semi-nested PCR employed in this study targets the VP1/capsid of norovirus GI and GII, producing amplicons of approximatley 344/340 bp respectively.
Associated datasets and input files will be deposited at zeonodo, following publication. Please see the associated prepint at https://www.biorxiv.org/content/10.1101/2022.12.23.521849v1