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resources from my multi-omics code review presentation :)

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README.md
README.md
 
 
joint_rpca.ipynb
joint_rpca.ipynb
 
 
jrpca_qiime2-202211.yml
jrpca_qiime2-202211.yml
 
 
mmvec.sh
mmvec.sh
 
 
mmvec_qiime2-20206.yml
mmvec_qiime2-20206.yml
 
 

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Joint-RPCA & mmvec tutorial

Some resources from my Knight lab code review presentation.

Specifically:

  1. An example mmvec script that I ran on barnacle2
  2. An example joint-rpca script (without visualizations; I will usually just use seaborn clustermap/heatmap for feature correlations and emperor for biplots)
  3. QIIME environments for mmvec and joint-rpca

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resources from my multi-omics code review presentation :)

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