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downloads sra files from NCBI and extracts fastq files using parallel-fastq-dump, which is a wrapper around NCBI's fastq-dump

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aelbehery/sra-get-fastq

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sra-get-fastq

Description

sra-get-fastq downloads sra files from NCBI and extracts fastq files using parallel-fastq-dump, which is a wrapper around NCBI's fastq-dump.

Prerequisites

  1. wget
  2. parallel-fastq-dump

Installation

No need for installation; just copy the script to your bin folder.

Running

To know how to use the script and available options, type:

sra-fastq-get -h

© Ali Elbehery 2018

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downloads sra files from NCBI and extracts fastq files using parallel-fastq-dump, which is a wrapper around NCBI's fastq-dump

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