Update Reclustering.Rmd for pkgdown

vignettes/Reclustering.Rmd

@@ -24,7 +24,10 @@ library(MiscMetabar)
 ```{r}
 data(data_fungi_sp_known)
 otu <- asv2otu(data_fungi_sp_known, method = "clusterize")
-#otu_vs <- asv2otu(data_fungi_sp_known, method = "vsearch")
+```
+
+```{r, eval = FALSE}
+otu_vs <- asv2otu(data_fungi_sp_known, method = "vsearch")
 ```
 
 The vsearch method requires the installation of [Vsearch](https://github.com/torognes/vsearch).
@@ -36,15 +39,15 @@ summary_plot_pq(otu)
 
 ## Using lulu algorithm (https://www.nature.com/articles/s41467-017-01312-x)
 
-```{r, message=FALSE, results="hide"}
+```{r, message=FALSE, results="hide", eval = FALSE}
 library(devtools)
 install_github("adrientaudiere/lulu")  
 library("lulu")
 data(data_fungi_sp_known)
 lulu_res <- lulu_pq(data_fungi_sp_known)
 ```
 
-```{r}
+```{r, eval = FALSE}
 summary_plot_pq(data_fungi_sp_known)
 summary_plot_pq(lulu_res$new_physeq)
 ```