bugfix retry R-CMD-check github action

adrientaudiere · Dec 12, 2023 · 23118e2 · 23118e2
1 parent 283f98f
commit 23118e2
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diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -45,4 +45,4 @@ jobs:
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true
-          args: 'c("--no-tests", "--no-examples", "--no-vignettes", "--no-build-vignettes")'
+          args: 'c("--no-tests", "--no-examples", "--no-vignettes", "--no-build-vignettes", "--no-manual")'
diff --git a/R/controls.R b/R/controls.R
@@ -23,7 +23,7 @@ search_exact_seq_pq <- function(physeq, sequences) {
   res <- list()
   for (i in seq_along(sequences)) {
     original <- sequences[[i]]
-    rev <- reverse(sequences[[i]])
+    rev <- Biostrings::reverse(sequences[[i]])
     rev_comp <- Biostrings::reverseComplement(sequences[[i]])
     comp <- Biostrings::complement(sequences[[i]])