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problems using install from admb-13.0-linux.zip #272
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Bummer...
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Thanks @johnoel, thanks for working on this. |
Fixes for Issue #272 - avoid soft links.
Okay @iantaylor-NOAA, I updated the admb-13.0-linux.zip file which should correct the errors. Please give it a try... |
Works great in the GitHub actions. Thank you @johnoel! On my local linux server I still get some errors about missing stuff (pasted below just in case it helps someone else searching for an error), but I don't expect to ever be compiling there now that the github action is working. And if I do need to do so, I just use ADMB 13.0 built from source which worked fine.
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* change to lower warning count To use after fixing error msgs in ss3 * change workflow from admb 12.3 to 13.0 - requires now compiling admb from source for Mac OS * fix filename error * fix workflow for mac (checkout instead of unzip) * increase timeout limit (cancelled mac build) * increase timeout limit even further * switch to newer ubuntu -hoping to fix "'GLIBC_2.34' not found" * newer version of r-lib action * build linux from source - admb-project/admb#272 * switch run with est action to Windows - linux build is much slower right now * fix issues with switch from linux to windows * Revert "fix issues with switch from linux to windows" This reverts commit d6f0725. * Revert "switch run with est action to Windows" This reverts commit 6a6a996. * switch run action to build linux from source * update more workflows for admb 13.0 * fix ADMB 13.0 build for warnings workflow * fix admb location for warnings workflow * attempt fix for warnings build * another attempt to fix build with warnings * attempt another fix for warnings build * add diagnostics to debug failing build * yet another try * use revised linux distribution * fix extra line caused fail * another try for warnings build * add display of warnings to console * fix filter for warnings * restore simpler linux install Co-authored-by: Kathryn Doering <[email protected]>
* change to lower warning count To use after fixing error msgs in ss3 * change workflow from admb 12.3 to 13.0 - requires now compiling admb from source for Mac OS * fix filename error * fix workflow for mac (checkout instead of unzip) * increase timeout limit (cancelled mac build) * increase timeout limit even further * switch to newer ubuntu -hoping to fix "'GLIBC_2.34' not found" * newer version of r-lib action * build linux from source - admb-project/admb#272 * switch run with est action to Windows - linux build is much slower right now * fix issues with switch from linux to windows * Revert "fix issues with switch from linux to windows" This reverts commit d6f0725415cbb3a7463b68c6ae9f02a981ae0137. * Revert "switch run with est action to Windows" This reverts commit 6a6a99676dc4f90541f6cd08e99f0748355e2ea5. * switch run action to build linux from source * update more workflows for admb 13.0 * fix ADMB 13.0 build for warnings workflow * fix admb location for warnings workflow * attempt fix for warnings build * another attempt to fix build with warnings * attempt another fix for warnings build * add diagnostics to debug failing build * yet another try * use revised linux distribution * fix extra line caused fail * another try for warnings build * add display of warnings to console * fix filter for warnings * restore simpler linux install Co-authored-by: Kathryn Doering <[email protected]>
I'm revising some GitHub Actions to compile Stock Synthesis with ADMB 13.0 instead of 12.3 and ran into some problems with the Linux setup.
Using the "ubuntu-20.04" runner image (listed in https://github.com/actions/runner-images#available-environments), I got these errors
I got that same message on a local Linux server running "gcc version 4.8.5 20150623 (Red Hat 4.8.5-44)".
Switching the GitHub Action to the newer "ubuntu-22.04" runner produced this error:
see context of the error at https://github.com/nmfs-stock-synthesis/stock-synthesis/runs/8126396737?check_suite_focus=true#step:21:22.
The workflow I've modified (from something that @k-doering-NOAA had working well for ADMB 12.3) is here: https://github.com/nmfs-stock-synthesis/workflows/blob/admb13/.github/workflows/build-ss3.yml.
It now works for both Windows and Mac with ADMB 13.0. I could set up the Linux compile to build from source, which is what the Mac is doing, but that takes about 40 minutes vs 6 minutes for Windows (using admb-13.0-windows.zip).
@johnoel, any advice on what might be going wrong?
Also, FYI, when unzipping the admb-13.0-src.zip release on Windows without admin privileges I get the following messages:
The text was updated successfully, but these errors were encountered: