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MOM6: Cleaning up tides section
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- NOAA-GFDL/MOM6@4f1ecf4dd  Cleaning up tides section
- NOAA-GFDL/MOM6@b7fee4d14  Fix case
- NOAA-GFDL/MOM6@da3ec99d2  still cleaning the docs
- NOAA-GFDL/MOM6@078ec30d8  Fix the Accad ref.
- NOAA-GFDL/MOM6@d93f8bf6b  Clean out another duplicate ref.
- NOAA-GFDL/MOM6@4fa86fdbc  Another duplicate ref
- NOAA-GFDL/MOM6@fb40a4ace  Another duplicate bib entry
- NOAA-GFDL/MOM6@86b4c85e5  Delete duplicate entry
- NOAA-GFDL/MOM6@369d716ba  Fix line length in comment
- NOAA-GFDL/MOM6@0e17b7389  Added Young reference
- NOAA-GFDL/MOM6@ec40a7ca0  Working on documentation links
- NOAA-GFDL/MOM6@780d93185  Two more references
- NOAA-GFDL/MOM6@d76926cbd  Failing attempt to link to mle docs.
- NOAA-GFDL/MOM6@a8d43f718  Adding Bodner reference
- NOAA-GFDL/MOM6@0440ed45f Perform unit conversion for internal heat only when it is applicable
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mom6bot authored and adcroft committed Jul 26, 2024
1 parent 97f475e commit d883da6
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Expand Up @@ -1388,7 +1388,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
KV_RESTRAT = 0.0 ! [m2 s-1] default = 0.0
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Expand Up @@ -359,7 +359,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)

! === module MOM_diagnostics ===

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Expand Up @@ -1388,7 +1388,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
KV_RESTRAT = 0.0 ! [m2 s-1] default = 0.0
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Expand Up @@ -335,7 +335,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)

! === module MOM_diagnostics ===

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Original file line number Diff line number Diff line change
Expand Up @@ -1388,7 +1388,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
KV_RESTRAT = 0.0 ! [m2 s-1] default = 0.0
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Expand Up @@ -338,7 +338,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)

! === module MOM_diagnostics ===

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2 changes: 1 addition & 1 deletion ice_ocean_SIS2/Baltic/MOM_parameter_doc.all
Original file line number Diff line number Diff line change
Expand Up @@ -1388,7 +1388,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
KV_RESTRAT = 0.0 ! [m2 s-1] default = 0.0
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2 changes: 1 addition & 1 deletion ice_ocean_SIS2/Baltic/MOM_parameter_doc.short
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Expand Up @@ -346,7 +346,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)

! === module MOM_diagnostics ===

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Expand Up @@ -1641,7 +1641,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
FOX_KEMPER_ML_RESTRAT_COEF2 = 0.0 ! [nondim] default = 0.0
Expand All @@ -1668,7 +1668,7 @@ MLE_MLD_DECAY_TIME2 = 0.0 ! [s] default = 0.0
! to the current MLD.
MLE_DENSITY_DIFF = 0.03 ! [kg/m3] default = 0.03
! Density difference used to detect the mixed-layer depth used for the
! mixed-layer eddy parameterization by Fox-Kemper et al. (2010)
! mixed-layer eddy parameterization by Fox-Kemper et al. (2011)
MLE_TAIL_DH = 0.0 ! [nondim] default = 0.0
! Fraction by which to extend the mixed-layer restratification depth used for a
! smoother stream function at the base of the mixed-layer.
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Expand Up @@ -392,7 +392,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)

! === module MOM_diagnostics ===

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2 changes: 1 addition & 1 deletion ice_ocean_SIS2/Baltic_OM4_025/MOM_parameter_doc.all
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Expand Up @@ -1654,7 +1654,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
FOX_KEMPER_ML_RESTRAT_COEF2 = 0.0 ! [nondim] default = 0.0
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2 changes: 1 addition & 1 deletion ice_ocean_SIS2/Baltic_OM4_025/MOM_parameter_doc.short
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Expand Up @@ -495,7 +495,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
MLE_FRONT_LENGTH = 500.0 ! [m] default = 0.0
! If non-zero, is the frontal-length scale used to calculate the upscaling of
! buoyancy gradients that is otherwise represented by the parameter
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2 changes: 1 addition & 1 deletion ice_ocean_SIS2/Baltic_OM4_05/MOM_parameter_doc.all
Original file line number Diff line number Diff line change
Expand Up @@ -1673,7 +1673,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
FOX_KEMPER_ML_RESTRAT_COEF2 = 0.0 ! [nondim] default = 0.0
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2 changes: 1 addition & 1 deletion ice_ocean_SIS2/Baltic_OM4_05/MOM_parameter_doc.short
Original file line number Diff line number Diff line change
Expand Up @@ -523,7 +523,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
MLE_FRONT_LENGTH = 200.0 ! [m] default = 0.0
! If non-zero, is the frontal-length scale used to calculate the upscaling of
! buoyancy gradients that is otherwise represented by the parameter
Expand Down
2 changes: 1 addition & 1 deletion ice_ocean_SIS2/OM4_025/MOM_parameter_doc.all
Original file line number Diff line number Diff line change
Expand Up @@ -1654,7 +1654,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
FOX_KEMPER_ML_RESTRAT_COEF2 = 0.0 ! [nondim] default = 0.0
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2 changes: 1 addition & 1 deletion ice_ocean_SIS2/OM4_025/MOM_parameter_doc.short
Original file line number Diff line number Diff line change
Expand Up @@ -502,7 +502,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
MLE_FRONT_LENGTH = 500.0 ! [m] default = 0.0
! If non-zero, is the frontal-length scale used to calculate the upscaling of
! buoyancy gradients that is otherwise represented by the parameter
Expand Down
2 changes: 1 addition & 1 deletion ice_ocean_SIS2/OM4_05/MOM_parameter_doc.all
Original file line number Diff line number Diff line change
Expand Up @@ -1673,7 +1673,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
FOX_KEMPER_ML_RESTRAT_COEF2 = 0.0 ! [nondim] default = 0.0
Expand Down
2 changes: 1 addition & 1 deletion ice_ocean_SIS2/OM4_05/MOM_parameter_doc.short
Original file line number Diff line number Diff line change
Expand Up @@ -528,7 +528,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
MLE_FRONT_LENGTH = 200.0 ! [m] default = 0.0
! If non-zero, is the frontal-length scale used to calculate the upscaling of
! buoyancy gradients that is otherwise represented by the parameter
Expand Down
2 changes: 1 addition & 1 deletion ice_ocean_SIS2/OM_1deg/MOM_parameter_doc.all
Original file line number Diff line number Diff line change
Expand Up @@ -1644,7 +1644,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 60.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
FOX_KEMPER_ML_RESTRAT_COEF2 = 0.0 ! [nondim] default = 0.0
Expand Down
2 changes: 1 addition & 1 deletion ice_ocean_SIS2/OM_1deg/MOM_parameter_doc.short
Original file line number Diff line number Diff line change
Expand Up @@ -531,7 +531,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 60.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
MLE_USE_PBL_MLD = True ! [Boolean] default = False
! If true, the MLE parameterization will use the mixed-layer depth provided by
! the active PBL parameterization. If false, MLE will estimate a MLD based on a
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2 changes: 1 addition & 1 deletion ice_ocean_SIS2/SIS2/MOM_parameter_doc.all
Original file line number Diff line number Diff line change
Expand Up @@ -1354,7 +1354,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
KV_RESTRAT = 0.0 ! [m2 s-1] default = 0.0
Expand Down
2 changes: 1 addition & 1 deletion ice_ocean_SIS2/SIS2/MOM_parameter_doc.short
Original file line number Diff line number Diff line change
Expand Up @@ -373,7 +373,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)

! === module MOM_diagnostics ===

Expand Down
2 changes: 1 addition & 1 deletion ice_ocean_SIS2/SIS2_bergs_cgrid/MOM_parameter_doc.all
Original file line number Diff line number Diff line change
Expand Up @@ -1354,7 +1354,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
KV_RESTRAT = 0.0 ! [m2 s-1] default = 0.0
Expand Down
2 changes: 1 addition & 1 deletion ice_ocean_SIS2/SIS2_bergs_cgrid/MOM_parameter_doc.short
Original file line number Diff line number Diff line change
Expand Up @@ -373,7 +373,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)

! === module MOM_diagnostics ===

Expand Down
2 changes: 1 addition & 1 deletion ice_ocean_SIS2/SIS2_cgrid/MOM_parameter_doc.all
Original file line number Diff line number Diff line change
Expand Up @@ -1354,7 +1354,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
KV_RESTRAT = 0.0 ! [m2 s-1] default = 0.0
Expand Down
2 changes: 1 addition & 1 deletion ice_ocean_SIS2/SIS2_cgrid/MOM_parameter_doc.short
Original file line number Diff line number Diff line change
Expand Up @@ -373,7 +373,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 20.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)

! === module MOM_diagnostics ===

Expand Down
2 changes: 1 addition & 1 deletion ocean_only/benchmark/MOM_parameter_doc.all
Original file line number Diff line number Diff line change
Expand Up @@ -1267,7 +1267,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 5.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)
USE_STANLEY_ML = False ! [Boolean] default = False
! If true, turn on Stanley SGS T variance parameterization in ML restrat code.
KV_RESTRAT = 0.0 ! [m2 s-1] default = 0.0
Expand Down
2 changes: 1 addition & 1 deletion ocean_only/benchmark/MOM_parameter_doc.short
Original file line number Diff line number Diff line change
Expand Up @@ -349,7 +349,7 @@ FOX_KEMPER_ML_RESTRAT_COEF = 5.0 ! [nondim] default = 0.0
! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic
! energy to the large-scale geostrophic kinetic energy or 1 plus the square of
! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al.
! (2010)
! (2011)

! === module MOM_diagnostics ===

Expand Down
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