Cannot chown or chmod bind mounted files/dirs #83

chrisdostert · 2021-12-07T00:14:52Z

Hello and thank you for the awesome project!

I'm running into an inconsistency between docker for mac and lima.
With docker for mac, I can successfully chown & chmod bind mounted files/dirs within a container.

If I attempt this with colima I get chown: file.txt: Permission denied

The text was updated successfully, but these errors were encountered:

thejan2009 · 2021-12-07T10:54:31Z

Related upstream issue: lima-vm/lima#231

lorsatti · 2022-01-12T23:06:31Z

I can chmod (tested with colima 0.3.0, but don't know if it is related). chown still not working.

jklewa · 2022-01-31T05:07:53Z

Getting this issue on some popular images, which will attempt to correct host-mounted volume file ownership/permissions during their entrypoint scripts

postgres:/var/lib/postgresql/data
redis:/data

HansG89 · 2022-03-02T08:24:42Z

Same problem with mosquitto mqtt broker from dockerhub

mosquitto:/mosquitto

jhogendorn · 2022-06-09T01:21:43Z

Is this considered fixed or still outstanding? I'm experiencing this issue with the jekyll/jekyll container, on the HEAD install of colima, lima, qemu.

I've tried following these instructions: lima-vm/lima#231 (comment)

But have not had any luck.

abiosoft · 2022-06-09T03:55:08Z

@jhogendorn what is your exact situation? Have you tried starting Colima with --mount-type 9p?

jhogendorn · 2022-06-09T04:13:41Z

@jhogendorn what is your exact situation? Have you tried starting Colima with --mount-type 9p?

I'm running a jekyll container with docker compose.

version: '2.2'

services:
  jekyll:
    image: jekyll/jekyll:stable
    command: jekyll serve --watch --force_polling --verbose
    ports:
      - 4000:4000
    volumes:
      - .:/srv/jekyll

Before, i was getting just a big list of chown errors.

If i start colima with --mount-type 9p then i get a slightly different permission error: /usr/local/lib/ruby/3.1.0/fileutils.rb:243:in mkdir: Permission denied @ dir_s_mkdir - /srv/jekyll/.jekyll-cache (Errno::EACCES)

I got around that by running mkdir .jekyll-cache

Then it was failing due to envygeeks/jekyll-docker#335

However, if i setup the gemfile to resolve this, it fails again with There was an error while trying to write to /srv/jekyll/Gemfile.lock

So it clearly cant write to the bind mount correctly. i've tried Z and rw modes in the volume as well.

abiosoft · 2022-06-09T04:19:56Z

@jhogendorn I am more confident in 9p than sshfs even though it's slower (provided you do not need symlinks).
It is most likely the user permission.

Does it work if you specify the uid manually by adding user: 501 to your docker compose file? You can verify your uid in the terminal with id -u.

jhogendorn · 2022-06-09T04:22:22Z

Does it work if you specify the uid manually by adding user: 501 to your docker compose file? You can verify your uid in the terminal with id -u.

No, it fails because it cannot find the jekyll binary due to how the container is constructed.

/usr/jekyll/bin/jekyll: exec: line 16: /usr/local/bundle/bin/jekyll: not found

Like a lot of poorly made containers, it requires to be run as root user.

jhogendorn · 2022-06-09T04:24:54Z

I will note its managed to create a directory structure inside .jekyll-cache, and has some files inside that.

Perhaps this is limited to the 'top level' of the mount? It could not create the .jekyll-cache folder, but can write inside it. Gemfile.lock will be top level also.

abiosoft · 2022-06-09T04:29:33Z

The other option is to make the directory writable for other users (not sure if that is ideal for you). This is specific to 9p mount.

chmod 777 ./jekyll

abiosoft · 2022-06-09T04:33:30Z

Perhaps this is limited to the 'top level' of the mount? It could not create the .jekyll-cache folder, but can write inside it. Gemfile.lock will be top level also.

For sshfs, yes. If the directory is created on the host, it cannot chmod on it, but works fine on subfiles and subdirectories.
For 9p, you can only write if running as root (in the container) or the container userId matches the owner of the directory on host.

jhogendorn · 2022-06-09T07:44:04Z

chmod 777 does work. thats a rough hack though.

I ended up swapping to a different base container, it became evident the issues were many and mostly around that particular container rather than colima etc.

Thanks for your help, appreciated.

maoxuner · 2022-11-21T07:43:42Z

@nulllpoint In a recent release, the securityModel option changed its default value; you may need to specify it manually for mapped-xattr.

Originally posted by @mritd in lima-vm/lima#231 (comment)

colima dosen't support 9p options in mounts. everytime it removes 9p from colima.yaml

currently can use lima override.yaml to modify mounts as a fallback

bofm · 2022-12-06T12:44:50Z

This is how I solved it. I had to write mounts for ~ twice: with absolute path and with ~.

Put this into your /Users/<username>/.lima/_config/override.yaml:

mountType: 9p
mounts:
  - location: "/Users/<username>"
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: "~"
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: /tmp/colima
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap

colima delete
colima start --mount-type 9p

Versions:

MBP M1 MacOS Monterey (12.5)
lima 0.13.0
colima 0.4.6

genki · 2022-12-21T16:54:23Z

@bofm Confirmed it fixes for my env too.

Macbook Air M2 MacOS 13.1
lima 0.14.1
colima 0.5.1

benblasco · 2022-12-22T11:48:20Z

No, it fails because it cannot find the jekyll binary due to how the container is constructed.

Hi @jhogendorn which container image did you switch to instead of jekyll/jekyll? I am encountering the exact same error message as you: /usr/jekyll/bin/jekyll: exec: line 16: /usr/local/bundle/bin/jekyll: not found

archcst · 2023-03-01T06:09:11Z

@bofm awesome! finaly fixed my same issue, thx!

atlasloewenherz · 2023-10-12T13:50:16Z

Hi everyone,

unfotuntely this is still persisting as a problem across multiple containers combinations:

`
➜ colima colima --version && lima --version && uname -a
colima version 0.5.6
limactl version 0.17.2
Darwin nubia 23.0.0 Darwin Kernel Version 23.0.0: Fri Sep 15 14:41:43 PDT 2023; root:xnu-10002.1.13~1/RELEASE_ARM64_T6000 arm64

`

when starting a container with a volume as following:

➜  colima docker run -it -v $(pwd)/volume:/data busybox:latest
docker: Error response from daemon: error while creating mount source path '/Users/ely/projects/kasandra/colima/volume': chown /Users/ely/projects/kasandra/colima/volume: operation not permitted.
ERRO[0000] error waiting for container:

the volume folder is available and writeable by the current user

docker info:

  colima docker info
Client: Docker Engine - Community
 Version:    24.0.6
 Context:    colima
 Debug Mode: false

Server:
 Containers: 12
  Running: 0
  Paused: 0
  Stopped: 12
 Images: 6
 Server Version: 23.0.6
 Storage Driver: overlay2
  Backing Filesystem: extfs
  Supports d_type: true
  Using metacopy: false
  Native Overlay Diff: true
  userxattr: false
 Logging Driver: json-file
 Cgroup Driver: cgroupfs
 Cgroup Version: 1
 Plugins:
  Volume: local
  Network: bridge host ipvlan macvlan null overlay
  Log: awslogs fluentd gcplogs gelf journald json-file local logentries splunk syslog
 Swarm: inactive
 Runtimes: io.containerd.runc.v2 runc
 Default Runtime: runc
 Init Binary: docker-init
 containerd version: 1fbd70374134b891f97ce19c70b6e50c7b9f4e0d
 runc version: 860f061b76bb4fc671f0f9e900f7d80ff93d4eb7
 init version:
 Security Options:
  seccomp
   Profile: builtin
 Kernel Version: 6.1.29-0-virt
 Operating System: Alpine Linux v3.18
 OSType: linux
 Architecture: aarch64
 CPUs: 4
 Total Memory: 15.59GiB
 Name: colima
 ID: ba948050-ef3d-4054-9702-8cc9e53c5669
 Docker Root Dir: /var/lib/docker
 Debug Mode: false
 Username: atlasloewenherz
 Experimental: false
 Insecure Registries:
  127.0.0.0/8
 Live Restore Enabled: false

abdonrd · 2023-10-20T23:47:57Z

Has anyone been able to solve it?

My use case:

version: '3'
services:
  database:
    image: postgis/postgis:13-master
    # Required when running on platform other than amd64, like Apple M1/M2:
    platform: linux/amd64
    volumes:
      - ./data/database:/var/lib/postgresql/data
    environment:
      POSTGRES_USER: 'directus'
      POSTGRES_PASSWORD: 'directus'
      POSTGRES_DB: 'directus'

  directus:
    image: directus/directus:10.4.0
    ports:
      - 8055:8055
    volumes:
      - ./uploads:/directus/uploads
      # If you want to load extensions from the host
      # - ./extensions:/directus/extensions
    depends_on:
      - database
    environment:
      KEY: '255d861b-5ea1-5996-9aa3-922530ec40b1'
      SECRET: '6116487b-cda1-52c2-b5b5-c8022c45e263'

      DB_CLIENT: 'pg'
      DB_HOST: 'database'
      DB_PORT: '5432'
      DB_DATABASE: 'directus'
      DB_USER: 'directus'
      DB_PASSWORD: 'directus'

      ADMIN_EMAIL: '[email protected]'
      ADMIN_PASSWORD: 'd1r3ctu5'

The logs are:

~/Desktop/directus-colima with node(v18.16.1) ⌚ 11:34:27
$ docker compose up
[+] Building 0.0s (0/0)                                                                                                                                           docker:colima
[+] Running 2/0
 ✔ Container directus-colima-database-1  Created                                                                                                                           0.0s 
 ✔ Container directus-colima-directus-1  Created                                                                                                                           0.0s 
Attaching to directus-colima-database-1, directus-colima-directus-1
directus-colima-database-1  | chown: changing ownership of '/var/lib/postgresql/data': Permission denied
directus-colima-database-1 exited with code 1
directus-colima-directus-1  | [15:34:30.729] INFO: Initializing bootstrap...
directus-colima-directus-1  | [15:34:55.866] ERROR: Can't connect to the database.
directus-colima-directus-1  | [15:34:55.867] ERROR: getaddrinfo ENOTFOUND database
directus-colima-directus-1  |     err: {
directus-colima-directus-1  |       "type": "Error",
directus-colima-directus-1  |       "message": "getaddrinfo ENOTFOUND database",
directus-colima-directus-1  |       "stack":
directus-colima-directus-1  |           Error: getaddrinfo ENOTFOUND database
directus-colima-directus-1  |               at GetAddrInfoReqWrap.onlookup [as oncomplete] (node:dns:107:26)
directus-colima-directus-1  |       "errno": -3008,
directus-colima-directus-1  |       "code": "ENOTFOUND",
directus-colima-directus-1  |       "syscall": "getaddrinfo",
directus-colima-directus-1  |       "hostname": "database"
directus-colima-directus-1  |     }
directus-colima-directus-1 exited with code 1

The error is:

chown: changing ownership of '/var/lib/postgresql/data':

Simple example:

version: '3'
services:
  database:
    image: postgres:15.4-alpine
    volumes:
      - ./data/database:/var/lib/postgresql/data
    environment:
      POSTGRES_USER: 'directus'
      POSTGRES_PASSWORD: 'directus'
      POSTGRES_DB: 'directus'

Console:

$ docker compose up
[+] Building 0.0s (0/0)                                                                                                                                                     docker:colima
[+] Running 2/0
 ✔ Network postgresql-colima_default       Created                                                                                                                                   0.0s 
 ✔ Container postgresql-colima-database-1  Created                                                                                                                                   0.0s 
Attaching to postgresql-colima-database-1
postgresql-colima-database-1  | chown: /var/lib/postgresql/data: Permission denied
postgresql-colima-database-1 exited with code 1

pablon · 2023-11-15T08:12:39Z

Has anyone been able to solve it?

Same use case.- Resolved it following @bofm 's comment in three easy steps:

1. Stop colima and create `override.yaml` file

🧨 To start from scratch I deleted all colima profiles first:

➜ colima list | awk "/$(uname -m)/ {print \$1}" | while read i ; do colima stop -p ${i} ; colima delete -p ${i} ; done

➜ colima stop

➜ [ -d "${HOME}/.colima/_config" ] || mkdir -vp "${HOME}/.colima/_config"

➜ cat << EOF > ${HOME}/.colima/_config/override.yaml
mountType: 9p
mounts:
  - location: ${HOME}
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: "~"
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: /tmp/colima
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
EOF

2. Edit the template

⚠️ Make sure you have: mountType: 9p

➜ colima template

3. Then start colima editing the configuration file before start:

⚠️ Make sure you have: mountType: 9p

➜ colima start --edit

Tried your docker-compose.yaml example:

version: '3'
services:
  database:
    image: postgres:15.4-alpine
    volumes:
      - ./data/database:/var/lib/postgresql/data
    environment:
      POSTGRES_USER: 'directus'
      POSTGRES_PASSWORD: 'directus'
      POSTGRES_DB: 'directus'

➜  ls -lao
total 8
drwxr-xr-x   3 user   96 Nov 15 08:54 ./
drwxr-xr-x  23 user  736 Nov 15 08:53 ../
-rw-r--r--   1 user  244 Nov 15 08:49 docker-compose.yaml

➜  docker compose up -d
[+] Building 0.0s (0/0)                                    docker:colima
[+] Running 2/2
 ✔ Network colima_default       Created                    0.1s
 ✔ Container colima-database-1  Started                    0.0s

➜  ls -lao
total 8
drwxr-xr-x   4 user  128 Nov 15 08:54 ./
drwxr-xr-x  23 user  736 Nov 15 08:53 ../
drwx------@  3 user   96 Nov 15 08:54 data/
-rw-r--r--   1 user  244 Nov 15 08:49 docker-compose.yaml

➜  tree -d data
data
└── database
    ├── base
    │   ├── 1
    │   ├── 16384
    │   ├── 4
    │   └── 5
    ├── global
    ├── pg_commit_ts
    ├── pg_dynshmem
    ├── pg_logical
    │   ├── mappings
    │   └── snapshots
    ├── pg_multixact
    │   ├── members
    │   └── offsets
    ├── pg_notify
    ├── pg_replslot
    ├── pg_serial
    ├── pg_snapshots
    ├── pg_stat
    ├── pg_stat_tmp
    ├── pg_subtrans
    ├── pg_tblspc
    ├── pg_twophase
    ├── pg_wal
    │   └── archive_status
    └── pg_xact

28 directories

➜  docker exec -it colima-database-1 psql -U directus -c '\l'
                                                List of databases
   Name    |  Owner   | Encoding |  Collate   |   Ctype    | ICU Locale | Locale Provider |   Access privileges
-----------+----------+----------+------------+------------+------------+-----------------+-----------------------
 directus  | directus | UTF8     | en_US.utf8 | en_US.utf8 |            | libc            |
 postgres  | directus | UTF8     | en_US.utf8 | en_US.utf8 |            | libc            |
 template0 | directus | UTF8     | en_US.utf8 | en_US.utf8 |            | libc            | =c/directus          +
           |          |          |            |            |            |                 | directus=CTc/directus
 template1 | directus | UTF8     | en_US.utf8 | en_US.utf8 |            | libc            | =c/directus          +
           |          |          |            |            |            |                 | directus=CTc/directus
(4 rows)

darwin21.0
colima version 0.6.1
limactl version 0.18.0
x86_64

97lele · 2023-11-28T09:46:05Z

This is how I solved it. I had to write mounts for ~ twice: with absolute path and with ~.
Put this into your /Users/<username>/.lima/_config/override.yaml:
mountType: 9p
mounts:
  - location: "/Users/<username>"
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: "~"
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: /tmp/colima
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
colima delete

colima start --mount-type 9p
Versions:

MBP M1 MacOS Monterey (12.5)

lima 0.13.0

colima 0.4.6

It can't work by path/Users/<username>/.lima/_config in my version ,
then i chose another path /Users/<username>/.colima/_lima/_config and it works ,for reference only

MBP M1 MacOS Monterey (12.4)
lima 0.18.0
colima 0.6.1

jredbeard · 2023-12-09T21:56:28Z

This is how I solved it. I had to write mounts for ~ twice: with absolute path and with ~.
Put this into your /Users/<username>/.lima/_config/override.yaml:
mountType: 9p
mounts:
  - location: "/Users/<username>"
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: "~"
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: /tmp/colima
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
colima delete

colima start --mount-type 9p
Versions:

MBP M1 MacOS Monterey (12.5)

lima 0.13.0

colima 0.4.6
It can't work by path/Users/<username>/.lima/_config in my version , then i chose another path /Users/<username>/.colima/_lima/_config and it works ,for reference only

MBP M1 MacOS Monterey (12.4)

lima 0.18.0

colima 0.6.1

Also worked for me. Thanks!

ishan123456789 · 2024-01-16T04:40:24Z

This is how I solved it. I had to write mounts for ~ twice: with absolute path and with ~.
Put this into your /Users/<username>/.lima/_config/override.yaml:
mountType: 9p
mounts:
  - location: "/Users/<username>"
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: "~"
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: /tmp/colima
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
colima delete

colima start --mount-type 9p
Versions:

MBP M1 MacOS Monterey (12.5)

lima 0.13.0

colima 0.4.6
It can't work by path/Users/<username>/.lima/_config in my version , then i chose another path /Users/<username>/.colima/_lima/_config and it works ,for reference only

MBP M1 MacOS Monterey (12.4)

lima 0.18.0

colima 0.6.1

This works but I had override.yaml defined at this path as well /Users/<username>/.lima/_config so make sure you delete this one before defining one at /Users/<username>/.colima/_lima/_config path else it won't allow colima to even start

Rahim-Chan · 2024-05-17T02:13:44Z

This is how I solved it. I had to write mounts for ~ twice: with absolute path and with ~.
Put this into your /Users/<username>/.lima/_config/override.yaml:
mountType: 9p
mounts:
  - location: "/Users/<username>"
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: "~"
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
  - location: /tmp/colima
    writable: true
    9p:
      securityModel: mapped-xattr
      cache: mmap
colima delete

colima start --mount-type 9p
Versions:

MBP M1 MacOS Monterey (12.5)

lima 0.13.0

colima 0.4.6
It can't work by path/Users/<username>/.lima/_config in my version , then i chose another path /Users/<username>/.colima/_lima/_config and it works ,for reference only

MBP M1 MacOS Monterey (12.4)

lima 0.18.0

colima 0.6.1
Also worked for me. Thanks!

This works

Stokestack · 2024-07-17T19:13:23Z

Another popular software package that's afflicted by this: Supabase. Bug report here.

ruslanvs · 2024-08-03T22:32:22Z

Yes! Changing the VM type to macOS Virtualization.Framework as recommended here worked for me:

# delete existing instance
colima delete 

# create new instance with vz
colima start --vm-type=vz

Another popular software package that's afflicted by this: Supabase. Bug report here.

@Stokestack thanks for this pointer!

dimitarvp · 2024-12-10T14:25:03Z

I confirm that changing Colima's VM type worked for me without having to change anything else (so I did not do any of the steps contained in the highest upvoted comment much more above). Thanks @ruslanvs.

aaschmid mentioned this issue Dec 14, 2021

add documenation for installation via nix #89

Merged

abiosoft mentioned this issue Jan 14, 2022

colima is overwritting ~/.lima/colima/lima.yam during startup #118

Closed

jklewa mentioned this issue Jan 31, 2022

Unable to write to bind mount #102

Open

snacktary mentioned this issue Mar 22, 2022

Networking issue on M1 Colima + Docker engine runtime #222

Closed

abiosoft mentioned this issue Apr 5, 2022

pre 0.4.0 #251

Merged

archcst mentioned this issue Mar 1, 2023

Issue with writable volumes #54

Closed

benclmnt mentioned this issue Jul 20, 2023

Running a stateful container using colima benclmnt/til#3

Open

gvenzl mentioned this issue Aug 6, 2023

Issue with Password Reset in gvenzl/oracle-xe:21.3.0 Docker Image gvenzl/oci-oracle-xe#219

Closed

igarridot mentioned this issue Aug 7, 2023

File system change events (inotify) support for mounted directories lima-vm/lima#615

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宿主机路径挂载无操作权限 #760

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walnutist mentioned this issue Sep 22, 2023

Not able to bootstrap the container on macOS Ventura 13.5.2/13.6.0 boredazfcuk/docker-icloudpd#391

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tarilabs mentioned this issue Oct 27, 2023

DevContainer and Mac OSX mount permissions devcontainers/spec#325

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arilence mentioned this issue Jan 4, 2024

Can't mount volumes with 9p securityModel: mapped-xattr #944

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magicgopher mentioned this issue Jul 17, 2024

Attempts to mount volumes fail with permissions errors in Colima, but not Docker Desktop #1067

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Error: error building, (re)creating or starting [postgres] project containers (possibly Mac and/or colima/lima only) astronomer/ebook-etl-elt#1

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Cannot chown or chmod bind mounted files/dirs #83

Cannot chown or chmod bind mounted files/dirs #83

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Cannot chown or chmod bind mounted files/dirs #83

Cannot chown or chmod bind mounted files/dirs #83

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chrisdostert commented Dec 7, 2021

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HansG89 commented Mar 2, 2022

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abiosoft commented Jun 9, 2022

jhogendorn commented Jun 9, 2022 • edited Loading

abiosoft commented Jun 9, 2022 • edited Loading

jhogendorn commented Jun 9, 2022

jhogendorn commented Jun 9, 2022

abiosoft commented Jun 9, 2022 • edited Loading

abiosoft commented Jun 9, 2022

jhogendorn commented Jun 9, 2022

maoxuner commented Nov 21, 2022 • edited Loading

bofm commented Dec 6, 2022

genki commented Dec 21, 2022 • edited Loading

benblasco commented Dec 22, 2022

archcst commented Mar 1, 2023

atlasloewenherz commented Oct 12, 2023 • edited Loading

when starting a container with a volume as following:

docker info:

abdonrd commented Oct 20, 2023 • edited Loading

pablon commented Nov 15, 2023 • edited Loading

1. Stop colima and create override.yaml file

2. Edit the template

3. Then start colima editing the configuration file before start:

Tried your docker-compose.yaml example:

97lele commented Nov 28, 2023

jredbeard commented Dec 9, 2023

ishan123456789 commented Jan 16, 2024 • edited Loading

Rahim-Chan commented May 17, 2024

Stokestack commented Jul 17, 2024

ruslanvs commented Aug 3, 2024

dimitarvp commented Dec 10, 2024 • edited Loading

jhogendorn commented Jun 9, 2022 •

edited

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abiosoft commented Jun 9, 2022 •

edited

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abiosoft commented Jun 9, 2022 •

edited

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maoxuner commented Nov 21, 2022 •

edited

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genki commented Dec 21, 2022 •

edited

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atlasloewenherz commented Oct 12, 2023 •

edited

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abdonrd commented Oct 20, 2023 •

edited

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pablon commented Nov 15, 2023 •

edited

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1. Stop colima and create `override.yaml` file

ishan123456789 commented Jan 16, 2024 •

edited

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dimitarvp commented Dec 10, 2024 •

edited

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