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Update README.md
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add time and memory comparisons
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ZhangZhenmiao authored May 13, 2021
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Expand Up @@ -77,3 +77,9 @@ optional arguments:
In the OUTPUT folder, we provide two types of binning result:
- ```binning_result.csv```, each line is contig_name, cluster_id
- ```cluster.*.fasta```, the contigs in fasta format of each cluster

## Time and Memory comparing with GraphBin (v1.3)
- The comparison results can be accessed [here](https://drive.google.com/drive/folders/11U4YwiLLrcTCwpWy7Vax9n5Pk99E_8WL?usp=sharing).
- The machine used for comparison is CentOS 8.2 (64-bit), with Dual 26-core Intel Xeon Gold 6230R 2.10GHz CPU and 768GB RAM.
- The measured time and memory include GraphBin/METAMVGL binning on MaxBin2/MetaBAT2 initial binning results from metaSPAdes/MEGAHIT assembly on BMock12, SYNTH64 and Sharon datasets.
- The `time_memory/README.md` has the commands for binning, the evaluation results are in `time_memory/*/*/*.time` and generated by `time_memory/run_compare.sh`.

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