Skip to content

Latest commit

 

History

History

phylogenome

Folders and files

NameName
Last commit message
Last commit date

parent directory

..
 
 
 
 
 
 
 
 
 
 
 
 
 
 

phylogenome workflow

Overall workflow

Description of workflow

  • Construction of phylogenomic tree using gtotree
  • Count pairwise ANI
    • Draw matrix
  • Construction of 16S tree
    • Include sequences from SILVA database
  • Count 16S pairwise similarity
    • Draw matrix

Notes

  • Will include genomes from Methylomirabilales order as outgroup. Accession IDs of :
    Accession Taxonomic description
    ASM304403v1 Methylomirabilis limnetica
    ASM9116v1 Methylomirabilis oxyfera