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phylogenome workflow

Overall workflow

Description of workflow

  • Construction of phylogenomic tree using gtotree
  • Count pairwise ANI
    • Draw matrix
  • Construction of 16S tree
    • Include sequences from SILVA database
  • Count 16S pairwise similarity
    • Draw matrix

Notes

  • Will include genomes from Methylomirabilales order as outgroup. Accession IDs of :
    Accession Taxonomic description
    ASM304403v1 Methylomirabilis limnetica
    ASM9116v1 Methylomirabilis oxyfera