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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,354 @@ | ||
| name: popv_bench | ||
| channels: | ||
| - conda-forge | ||
| - defaults | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=main | ||
| - _openmp_mutex=5.1=1_gnu | ||
| - asttokens=2.2.1=pyhd8ed1ab_0 | ||
| - backcall=0.2.0=pyh9f0ad1d_0 | ||
| - backports=1.0=pyhd8ed1ab_3 | ||
| - backports.functools_lru_cache=1.6.5=pyhd8ed1ab_0 | ||
| - ca-certificates=2023.7.22=hbcca054_0 | ||
| - comm=0.1.4=pyhd8ed1ab_0 | ||
| - debugpy=1.6.7=py39h6a678d5_0 | ||
| - decorator=5.1.1=pyhd8ed1ab_0 | ||
| - entrypoints=0.4=pyhd8ed1ab_0 | ||
| - executing=1.2.0=pyhd8ed1ab_0 | ||
| - ipykernel=6.25.1=pyh71e2992_0 | ||
| - ipython=8.14.0=pyh41d4057_0 | ||
| - jedi=0.19.0=pyhd8ed1ab_0 | ||
| - jupyter_client=7.3.4=pyhd8ed1ab_0 | ||
| - jupyter_core=5.3.1=py39hf3d152e_0 | ||
| - ld_impl_linux-64=2.38=h1181459_1 | ||
| - libffi=3.3=he6710b0_2 | ||
| - libgcc-ng=11.2.0=h1234567_1 | ||
| - libgomp=11.2.0=h1234567_1 | ||
| - libsodium=1.0.18=h36c2ea0_1 | ||
| - libstdcxx-ng=11.2.0=h1234567_1 | ||
| - matplotlib-inline=0.1.6=pyhd8ed1ab_0 | ||
| - ncurses=6.4=h6a678d5_0 | ||
| - openssl=1.1.1l=h7f98852_0 | ||
| - packaging=23.1=pyhd8ed1ab_0 | ||
| - parso=0.8.3=pyhd8ed1ab_0 | ||
| - pexpect=4.8.0=pyh1a96a4e_2 | ||
| - pickleshare=0.7.5=py_1003 | ||
| - platformdirs=3.10.0=pyhd8ed1ab_0 | ||
| - prompt-toolkit=3.0.39=pyha770c72_0 | ||
| - prompt_toolkit=3.0.39=hd8ed1ab_0 | ||
| - ptyprocess=0.7.0=pyhd3deb0d_0 | ||
| - pure_eval=0.2.2=pyhd8ed1ab_0 | ||
| - pygments=2.16.1=pyhd8ed1ab_0 | ||
| - python=3.9.0=hdb3f193_2 | ||
| - python-dateutil=2.8.2=pyhd8ed1ab_0 | ||
| - python_abi=3.9=2_cp39 | ||
| - readline=8.2=h5eee18b_0 | ||
| - setuptools=68.0.0=py39h06a4308_0 | ||
| - sqlite=3.41.2=h5eee18b_0 | ||
| - stack_data=0.6.2=pyhd8ed1ab_0 | ||
| - tk=8.6.12=h1ccaba5_0 | ||
| - traitlets=5.9.0=pyhd8ed1ab_0 | ||
| - typing_extensions=4.7.1=pyha770c72_0 | ||
| - wcwidth=0.2.6=pyhd8ed1ab_0 | ||
| - wheel=0.38.4=py39h06a4308_0 | ||
| - xz=5.4.2=h5eee18b_0 | ||
| - zeromq=4.3.4=h9c3ff4c_1 | ||
| - zlib=1.2.13=h5eee18b_0 | ||
| - pip: | ||
| - absl-py==1.4.0 | ||
| - aiobotocore==2.9.0 | ||
| - aiohttp==3.8.5 | ||
| - aioitertools==0.11.0 | ||
| - aiosignal==1.3.1 | ||
| - alabaster==0.7.13 | ||
| - anndata==0.8.0 | ||
| - annoy==1.17.3 | ||
| - anyio==3.7.1 | ||
| - array-api-compat==1.4 | ||
| - arrow==1.2.3 | ||
| - astunparse==1.6.3 | ||
| - async-timeout==4.0.3 | ||
| - attrs==23.1.0 | ||
| - babel==2.12.1 | ||
| - backoff==2.2.1 | ||
| - bbknn==1.5.1 | ||
| - beautifulsoup4==4.12.2 | ||
| - bleach==6.0.0 | ||
| - blessed==1.20.0 | ||
| - botocore==1.33.13 | ||
| - cachetools==5.3.1 | ||
| - celltypist==1.6.0 | ||
| - cellxgene-census==1.9.1 | ||
| - certifi==2023.7.22 | ||
| - cffi==1.16.0 | ||
| - charset-normalizer==3.2.0 | ||
| - chex==0.1.7 | ||
| - click==8.1.6 | ||
| - cloudpickle==3.0.0 | ||
| - cmake==3.27.2 | ||
| - contextlib2==21.6.0 | ||
| - contourpy==1.1.0 | ||
| - croniter==1.4.1 | ||
| - cryptography==42.0.3 | ||
| - cubinlinker-cu11==0.3.0.post1 | ||
| - cuda-python==12.4.0 | ||
| - cudf-cu11==24.4.0 | ||
| - cudf-cu12==24.4.0 | ||
| - cugraph-cu11==24.4.0 | ||
| - cugraph-cu12==24.4.0 | ||
| - cuml-cu11==24.4.0 | ||
| - cuml-cu12==24.4.0 | ||
| - cupy-cuda11x==13.0.0 | ||
| - cupy-cuda12x==13.0.0 | ||
| - cycler==0.11.0 | ||
| - cython==3.0.0 | ||
| - dask==2024.1.1 | ||
| - dask-cuda==24.4.0 | ||
| - dask-cudf-cu11==24.4.0 | ||
| - dask-cudf-cu12==24.4.0 | ||
| - dask-expr==0.4.0 | ||
| - dateutils==0.6.12 | ||
| - deepdiff==6.3.1 | ||
| - defusedxml==0.7.1 | ||
| - distlib==0.3.8 | ||
| - distributed==2024.1.1 | ||
| - dm-tree==0.1.8 | ||
| - docrep==0.3.2 | ||
| - docutils==0.17.1 | ||
| - editables==0.5 | ||
| - et-xmlfile==1.1.0 | ||
| - etils==1.4.1 | ||
| - exceptiongroup==1.1.3 | ||
| - fastapi==0.98.0 | ||
| - fastjsonschema==2.18.0 | ||
| - fastrlock==0.8.2 | ||
| - fbpca==1.0 | ||
| - filelock==3.12.2 | ||
| - flatbuffers==23.5.26 | ||
| - flax==0.7.2 | ||
| - fonttools==4.42.0 | ||
| - frozenlist==1.4.0 | ||
| - fsspec==2023.12.2 | ||
| - gast==0.4.0 | ||
| - gdown==4.7.1 | ||
| - geosketch==1.2 | ||
| - google-auth==2.22.0 | ||
| - google-auth-oauthlib==1.0.0 | ||
| - google-pasta==0.2.0 | ||
| - grpcio==1.57.0 | ||
| - h11==0.14.0 | ||
| - h5py==3.9.0 | ||
| - harmony-pytorch==0.1.7 | ||
| - hatch==1.9.3 | ||
| - hatchling==1.21.1 | ||
| - httpcore==1.0.3 | ||
| - httpx==0.26.0 | ||
| - huggingface-hub==0.11.1 | ||
| - hyperlink==21.0.0 | ||
| - idna==3.4 | ||
| - igraph==0.10.6 | ||
| - imagesize==1.4.1 | ||
| - imgkit==1.2.2 | ||
| - importlib-metadata==7.0.1 | ||
| - importlib-resources==6.0.1 | ||
| - inquirer==3.1.3 | ||
| - intervaltree==3.1.0 | ||
| - ipywidgets==8.1.0 | ||
| - itsdangerous==2.1.2 | ||
| - jaraco-classes==3.3.1 | ||
| - jax==0.4.10 | ||
| - jaxlib==0.4.10 | ||
| - jeepney==0.8.0 | ||
| - jinja2==3.1.2 | ||
| - jmespath==1.0.1 | ||
| - joblib==1.3.2 | ||
| - jsonschema==4.19.0 | ||
| - jsonschema-specifications==2023.7.1 | ||
| - jupyter-client==7.4.9 | ||
| - jupyterlab-pygments==0.2.2 | ||
| - jupyterlab-widgets==3.0.8 | ||
| - keras==2.13.1 | ||
| - keyring==24.3.0 | ||
| - kiwisolver==1.4.4 | ||
| - leidenalg==0.10.1 | ||
| - libclang==16.0.6 | ||
| - lightning==2.0.6 | ||
| - lightning-cloud==0.5.37 | ||
| - lightning-utilities==0.9.0 | ||
| - lit==16.0.6 | ||
| - llvmlite==0.41.1 | ||
| - locket==1.0.0 | ||
| - louvain==0.8.1 | ||
| - markdown==3.3.4 | ||
| - markdown-it-py==3.0.0 | ||
| - markupsafe==2.1.3 | ||
| - matplotlib==3.7.2 | ||
| - mdurl==0.1.2 | ||
| - mistune==3.0.1 | ||
| - ml-collections==0.1.1 | ||
| - ml-dtypes==0.2.0 | ||
| - more-itertools==10.2.0 | ||
| - mpmath==1.3.0 | ||
| - msgpack==1.0.5 | ||
| - mudata==0.2.3 | ||
| - multidict==6.0.4 | ||
| - multipledispatch==1.0.0 | ||
| - natsort==8.4.0 | ||
| - nbclient==0.8.0 | ||
| - nbconvert==7.7.3 | ||
| - nbformat==5.9.2 | ||
| - nbsphinx==0.9.2 | ||
| - nbsphinx-link==1.3.0 | ||
| - nest-asyncio==1.5.7 | ||
| - networkx==3.1 | ||
| - nltk==3.8.1 | ||
| - numba==0.58.1 | ||
| - numpy==1.24.3 | ||
| - numpyro==0.12.1 | ||
| - nvidia-cublas-cu11==11.10.3.66 | ||
| - nvidia-cuda-cupti-cu11==11.7.101 | ||
| - nvidia-cuda-nvrtc-cu11==11.7.99 | ||
| - nvidia-cuda-runtime-cu11==11.7.99 | ||
| - nvidia-cudnn-cu11==8.5.0.96 | ||
| - nvidia-cufft-cu11==10.9.0.58 | ||
| - nvidia-curand-cu11==10.2.10.91 | ||
| - nvidia-cusolver-cu11==11.4.0.1 | ||
| - nvidia-cusparse-cu11==11.7.4.91 | ||
| - nvidia-nccl-cu11==2.14.3 | ||
| - nvidia-nvtx-cu11==11.7.91 | ||
| - nvtx==0.2.10 | ||
| - oauthlib==3.2.2 | ||
| - obonet==1.0.0 | ||
| - onclass==1.3 | ||
| - openpyxl==3.1.2 | ||
| - opt-einsum==3.3.0 | ||
| - optax==0.1.7 | ||
| - orbax-checkpoint==0.3.2 | ||
| - ordered-set==4.1.0 | ||
| - pandas==2.2.1 | ||
| - pandocfilters==1.5.0 | ||
| - partd==1.4.1 | ||
| - pathspec==0.12.1 | ||
| - patsy==0.5.3 | ||
| - pillow==10.0.0 | ||
| - pip==24.0 | ||
| - pluggy==1.4.0 | ||
| - popv==0.2.2 | ||
| - protobuf==4.24.0 | ||
| - psutil==5.9.5 | ||
| - ptxcompiler-cu11==0.8.1.post1 | ||
| - pyarrow==14.0.2 | ||
| - pyarrow-hotfix==0.6 | ||
| - pyasn1==0.5.0 | ||
| - pyasn1-modules==0.3.0 | ||
| - pycparser==2.21 | ||
| - pydantic==1.10.12 | ||
| - pyjwt==2.8.0 | ||
| - pylibcugraph-cu11==24.4.0 | ||
| - pylibcugraph-cu12==24.4.0 | ||
| - pylibraft-cu11==24.4.0 | ||
| - pylibraft-cu12==24.4.0 | ||
| - pynndescent==0.5.10 | ||
| - pynvjitlink-cu12==0.1.14 | ||
| - pynvml==11.4.1 | ||
| - pyparsing==3.0.9 | ||
| - pyro-api==0.1.2 | ||
| - pyro-ppl==1.8.6 | ||
| - pysocks==1.7.1 | ||
| - python-editor==1.0.4 | ||
| - python-multipart==0.0.6 | ||
| - pytorch-lightning==2.0.6 | ||
| - pytz==2023.3 | ||
| - pyyaml==6.0.1 | ||
| - pyzmq==25.1.1 | ||
| - raft-dask-cu11==24.4.0 | ||
| - raft-dask-cu12==24.4.0 | ||
| - rapids-dask-dependency==24.4.1 | ||
| - readchar==4.0.5 | ||
| - referencing==0.30.2 | ||
| - regex==2023.8.8 | ||
| - requests==2.31.0 | ||
| - requests-oauthlib==1.3.1 | ||
| - rich==13.5.2 | ||
| - rmm-cu11==24.4.0 | ||
| - rmm-cu12==24.4.0 | ||
| - rpds-py==0.9.2 | ||
| - rsa==4.9 | ||
| - s3fs==2023.12.2 | ||
| - scanorama==1.7.3 | ||
| - scanpy==1.9.3 | ||
| - scikit-learn==0.24.2 | ||
| - scipy==1.11.1 | ||
| - scvi-tools==1.0.3 | ||
| - seaborn==0.12.2 | ||
| - secretstorage==3.3.3 | ||
| - sentence-transformers==2.2.2 | ||
| - sentencepiece==0.1.99 | ||
| - session-info==1.0.0 | ||
| - shellingham==1.5.4 | ||
| - six==1.15.0 | ||
| - sniffio==1.3.0 | ||
| - snowballstemmer==2.2.0 | ||
| - somacore==1.0.6 | ||
| - sortedcontainers==2.4.0 | ||
| - soupsieve==2.4.1 | ||
| - sparse==0.14.0 | ||
| - sphinx==4.3.2 | ||
| - sphinxcontrib-applehelp==1.0.4 | ||
| - sphinxcontrib-devhelp==1.0.2 | ||
| - sphinxcontrib-htmlhelp==2.0.1 | ||
| - sphinxcontrib-jsmath==1.0.1 | ||
| - sphinxcontrib-qthelp==1.0.3 | ||
| - sphinxcontrib-serializinghtml==1.1.5 | ||
| - starlette==0.27.0 | ||
| - starsessions==1.3.0 | ||
| - statsmodels==0.14.0 | ||
| - stdlib-list==0.9.0 | ||
| - sympy==1.12 | ||
| - tblib==3.0.0 | ||
| - tensorboard==2.13.0 | ||
| - tensorboard-data-server==0.7.1 | ||
| - tensorflow==2.13.0 | ||
| - tensorflow-estimator==2.13.0 | ||
| - tensorflow-io-gcs-filesystem==0.33.0 | ||
| - tensorstore==0.1.41 | ||
| - termcolor==2.3.0 | ||
| - texttable==1.6.7 | ||
| - threadpoolctl==3.2.0 | ||
| - tiledb==0.24.0 | ||
| - tiledbsoma==1.6.1 | ||
| - tinycss2==1.2.1 | ||
| - tokenizers==0.13.3 | ||
| - tomli==2.0.1 | ||
| - tomli-w==1.0.0 | ||
| - tomlkit==0.12.3 | ||
| - toolz==0.12.0 | ||
| - torch==2.0.1 | ||
| - torchmetrics==1.0.3 | ||
| - torchvision==0.15.2 | ||
| - tornado==6.3.3 | ||
| - tqdm==4.64.0 | ||
| - transformers==4.29.0 | ||
| - treelite==4.1.2 | ||
| - triton==2.0.0 | ||
| - trove-classifiers==2024.1.31 | ||
| - typing-extensions==4.2.0 | ||
| - tzdata==2024.1 | ||
| - ucx-py-cu11==0.37.0 | ||
| - ucx-py-cu12==0.37.0 | ||
| - umap-learn==0.5.3 | ||
| - urllib3==1.26.16 | ||
| - userpath==1.9.1 | ||
| - uvicorn==0.23.2 | ||
| - virtualenv==20.25.0 | ||
| - webencodings==0.5.1 | ||
| - websocket-client==1.6.1 | ||
| - websockets==11.0.3 | ||
| - werkzeug==2.3.7 | ||
| - widgetsnbextension==4.0.8 | ||
| - xarray==2023.7.0 | ||
| - yarl==1.9.2 | ||
| - zict==3.0.0 | ||
| - zipp==3.16.2 | ||
| - zstandard==0.22.0 | ||
| prefix: /home/cane/miniconda3/envs/popv_bench |