PopV

Fixed documentation. #183

	name: PopV

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main]

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	test:
	runs-on: ${{ matrix.os }}
	timeout-minutes: 40
	defaults:
	run:
	shell: bash -e {0} # -e to fail on error

	strategy:
	fail-fast: false
	matrix:
	include:
	- os: ubuntu-latest
	python: "3.10"
	- os: ubuntu-latest
	python: "3.11"
	- os: ubuntu-latest
	python: "3.12"

	name: ${{ matrix.os }} Python ${{ matrix.python }}

	env:
	OS: ${{ matrix.os }}
	PYTHON: ${{ matrix.python }}

	steps:
	- name: Set up Git LFS
	run: git lfs install

	- name: Check out repository
	uses: actions/checkout@v3
	with:
	lfs: true

	- name: Set up Python ${{ matrix.python }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python }}
	cache: "pip"
	cache-dependency-path: "**/pyproject.toml"

	- name: Debug LFS files
	run: \|
	ls -lh resources/dataset/test
	file resources/dataset/test/*.h5ad
	ls -lh resources/ontology
	file resources/ontology/*

	- name: Install test dependencies
	run: \|
	python -m pip install --upgrade pip wheel

	- name: Install dependencies
	run: \|
	pip install ${{ matrix.pip-flags }} ".[dev,test]"

	- name: Test
	env:
	MPLBACKEND: agg
	PLATFORM: ${{ matrix.os }}
	DISPLAY: :42
	run: \|
	coverage run -m pytest -v --color=yes

	- name: Report coverage
	run: \|
	coverage report

	- name: Upload coverage
	uses: codecov/codecov-action@v3

Provide feedback