Code

added base segmentation functionality#18

Code

Merged

RR-N merged 49 commits intomasterYemini-Lab/NeuroPAL_ID:masterfrom segmentationYemini-Lab/NeuroPAL_ID:segmentationCopy head branch name to clipboardJan 19, 2023

+8,617-2

Commits

Commits on Oct 27, 2022

• added hist func, fixed slider, drafted gen

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Commits on Oct 28, 2022

• Added black out tool.

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• added histogram functionality

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• Added manual avg non-cell intensity functionality

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• generate draft

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Commits on Nov 22, 2022

• autoseg window dr2

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• Individual z-slice masking/segmenting

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Commits on Dec 8, 2022

• Added auto nci calc, max proj state button

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• Information panel progress

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Commits on Dec 9, 2022

• tracker implementation

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• Create SegResults.m

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• Create Segmentation.m

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• AutoSeg -> Tracker

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• Segmentation functions

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• AutoSeg max proj dims

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Commits on Dec 12, 2022

• watershed

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• 3dct seg initial run

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• Reworked image panel

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• minor refactor

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Commits on Dec 13, 2022

• Update autoseg_window.mlapp

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Commits on Dec 16, 2022

• Model updates

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Commits on Jan 10, 2023

• Updated transform

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Commits on Jan 13, 2023

• unet+ffn model alternate format

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• fixed watershed

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• deleting obsolete matlab code

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• l_center_coord listing

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• Folder buttons

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• deleted obsolete matlab code

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• initial display rework

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• deleeted segaxe

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• merge prep

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• neuron_info export

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Commits on Jan 15, 2023

• labeloverlay slice functionality

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Commits on Jan 17, 2023

• Added neuron_info rois, auto res

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• noise calc is now 95th percentile

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• added slice roi functionality

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• fixed max proj roi recovery

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Commits on Jan 18, 2023

• full path py call

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Commits on Jan 19, 2023

• fixed avg non-cell intensity glitch

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• Added progress bar

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• neuron pass back

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• autoseg enable -> disable

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• added segmentation documentation

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• partial seg fix

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• Merge branch 'segmentation' of https://github.com/Yemini-Lab/NeuroPAL_ID into segmentation

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• delete obsolete case

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• Update .gitignore

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• color channel selection

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• Merge branch 'master' of https://github.com/Yemini-Lab/NeuroPAL_ID into segmentation

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