Add bulk correlation figure from plate 4 analysis #11
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This LGTM @gwaybio! I left a few comments. I think this pr may still be relevant to the figure of the paper, so I provided a review.
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You could also annotate the correlation value corresponding to the dashed horizontal line. It seems obvious the dashed line is at a correlation of zero, so maybe not necessary
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Some of the whiskers seem to be hidden behind points, but I think it doesn't detract visually from the plots, since there aren't too many points in my opinion.
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These could also be represented as violin plots, but a concise visualization may be better here
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Thanks for the review @MattsonCam - Sorry that I missed it and am returning to it so late. Thanks specifically for the figure recommendations. Given that @jenna-tomkinson will be regenerating this figure to be publication ready, I will save time by ignoring these suggestions for now. Jenna, please take these into consideration when generating the official figure. Thanks! Merging now! |
Preliminary figures visualizing correlation of bulk profiles in the plate 4 NF1 siRNA experiment.
This PR is pending several developments:
✅ @jenna-tomkinson: WayScience/nf1_schwann_cell_painting_data#21
✅ @MattsonCam refactor bulk data processing to use pycytominer (Jenna's contribution above)
✅ @MattsonCam add correlations to scramble for negative control
✅ @gwaybio rerun this notebook to incorporate the new profiles and new scramble correlations