add "set -e" to DeDrift... to handle debug trap not being active insi…

…de functions
Washington-University · Jan 11, 2021 · 716e9f4 · 716e9f4
1 parent 63f37cf
commit 716e9f4
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/DeDriftAndResample/DeDriftAndResamplePipeline.sh b/DeDriftAndResample/DeDriftAndResamplePipeline.sh
@@ -1071,6 +1071,7 @@ if [ -z "${HCPPIPEDIR}" ]; then
 fi
 
 # Load function libraries
+set -e                                                         # debug trap doesn't trigger in functions, temporary fix - needs to be *before* sourcing debug.shlib for detection of interactive shell to disable it
 source "${HCPPIPEDIR}/global/scripts/debug.shlib" "$@"         # Debugging functions; also sources log.shlib
 source ${HCPPIPEDIR}/global/scripts/opts.shlib                 # Command line option functions