Pull RAFT ctopt

RAFT/.github/ISSUE_TEMPLATE/bug_report.md

@@ -0,0 +1,30 @@
+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+## Description
+_Describe the bug here_
+
+### Steps to reproduce issue
+_Please provide a minimum working example (MWE) if possible_
+
+1. …
+2. …
+3. …
+
+### Current behavior
+…
+
+### Expected behavior
+…
+
+
+### Code versions
+_List versions only if relevant_
+- Python
+- …

RAFT/.github/ISSUE_TEMPLATE/feature_request.md

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+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+# Description of feature
+Describe the feature here and provide some context. Under what scenario would this be useful?
+
+# Potential solution
+Can you think of ways to implement this?

RAFT/.github/PULL_REQUEST_TEMPLATE.md

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+Delete the text explanations below these headers and replace them with information about your PR.
+Please first consult the [developer guide](https://weis.readthedocs.io/en/latest/how_to_contribute_code.html) to make sure your PR follows all code, testing, and documentation conventions.
+
+## Purpose
+Explain the goal of this pull request. If it addresses an existing issue be sure to link to it. Describe the big picture of your changes here, perhaps using a bullet list if multiple changes are done to accomplish a single goal. If it accomplishes multiple goals, it may be best to create separate PR's for each. 
+
+## Type of change
+What types of change is it?
+_Select the appropriate type(s) that describe this PR_
+
+- [ ] Bugfix (non-breaking change which fixes an issue)
+- [ ] New feature (non-breaking change which adds functionality)
+- [ ] Breaking change (non-backwards-compatible fix or feature)
+- [ ] Code style update (formatting, renaming)
+- [ ] Refactoring (no functional changes, no API changes)
+- [ ] Documentation update
+- [ ] Maintenance update
+- [ ] Other (please describe)
+
+## Testing
+Explain the steps needed to test the new code to verify that it does indeed address the issue and produce the expected behavior.
+
+## Checklist
+_Put an `x` in the boxes that apply._
+
+- [ ] I have run existing tests which pass locally with my changes
+- [ ] I have added new tests or examples that prove my fix is effective or that my feature works
+- [ ] I have added necessary documentation

RAFT/.github/workflows/CI_RAFT.yml

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+name: CI_RAFT
+
+# We run CI on push commits and pull requests on all branches
+on: [push, pull_request]
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+    build_conda:
+        name: Conda Build (${{ matrix.os }}) - ${{ matrix.python-version }}
+        runs-on: ${{ matrix.os }}
+        defaults:
+            run:
+                shell: bash -l {0}
+
+        strategy:
+            fail-fast: false #true
+            matrix:
+                os: ["ubuntu-latest", "macOS-latest", "windows-latest"]
+                python-version: ["3.10", "3.11"]
+
+        steps:
+            - name: checkout repository
+              uses: actions/checkout@v3
+
+            - uses: conda-incubator/setup-miniconda@v2
+              # https://github.com/marketplace/actions/setup-miniconda
+              with:
+                  mamba-version: "*"
+                  miniconda-version: "latest"
+                  #auto-update-conda: true
+                  python-version: ${{ matrix.python-version }}
+                  environment-file: environment.yml
+                  channels: conda-forge
+                  channel-priority: true          
+                  activate-environment: test
+                  auto-activate-base: false
+
+            # Install 
+            - name: Conda Install RAFT
+              run: |
+                  pip install -e .
+
+            - name: Example run
+              run: |
+                  cd examples
+                  python example_from_yaml.py false
+
+            - name: Test run
+              run: |
+                  cd tests
+                  pytest .
+

RAFT/.gitignore

@@ -18,4 +18,7 @@ raft/BEM/
 raft/HullMesh.pnl
 raft/platform.gdf
 tests/BEM/
-tests/platform.gdf
+tests/platform.gdf
+
+# Emacs
+*~

RAFT/environment.yml

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+name: test
+
+channels:
+  - conda-forge
+  - defaults
+
+dependencies:
+  - matplotlib
+  - moorpy
+  - numpy
+  - openmdao
+  - pyhams
+  - pip
+  - python
+  - pyyaml
+  - scipy
+  - setuptools
+  - wisdem

RAFT/examples/example_from_yaml.py

@@ -1,30 +1,44 @@
 # example script for running RAFT from a YAML input file
 
-import numpy as np
+import sys
 import matplotlib.pyplot as plt
 import yaml
 import raft
 
-# open the design YAML file and parse it into a dictionary for passing to raft
-with open('VolturnUS-S_example.yaml') as file:
-    design = yaml.load(file, Loader=yaml.FullLoader)
+def run_example(plot_flag = False):
+    # open the design YAML file and parse it into a dictionary for passing to raft
+    with open('VolturnUS-S_example.yaml') as file:
+        design = yaml.load(file, Loader=yaml.FullLoader)
 
-# Create the RAFT model (will set up all model objects based on the design dict)
-model = raft.Model(design)  
+    # Create the RAFT model (will set up all model objects based on the design dict)
+    model = raft.Model(design)  
 
-# Evaluate the system properties and equilibrium position before loads are applied
-model.analyzeUnloaded()
+    # Evaluate the system properties and equilibrium position before loads are applied
+    model.analyzeUnloaded()
 
-# Compute natural frequencie
-model.solveEigen()
+    # Compute natural frequencie
+    model.solveEigen()
 
-# Simule the different load cases
-model.analyzeCases(display=1)
+    # Simule the different load cases
+    model.analyzeCases(display=1)
 
-# Plot the power spectral densities from the load cases
-model.plotResponses()
+    if plot_flag:
+        # Plot the power spectral densities from the load cases
+        model.plotResponses()
 
-# Visualize the system in its most recently evaluated mean offset position
-model.plot(hideGrid=True)
+        # Visualize the system in its most recently evaluated mean offset position
+        model.plot()
 
-plt.show()
+        plt.show()
+
+if __name__ == "__main__":
+    if len(sys.argv) == 2:
+        plot_flag = sys.argv[1].lower() in ["1", "t", "true", "y", "yes", 1, True]
+    elif len(sys.argv) == 1:
+        plot_flag = True
+    else:
+        print("Usage: python example_from_yaml.py <True/False>")
+        print("  The last argument is an optional declaration to show or suppress the plots (default is True)")
+
+    run_example(plot_flag = plot_flag)
+