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@VenturelliLab

Venturelli Lab

Laboratory of Ophelia Venturelli at Duke University

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  1. Hromada_et_al_2021 Hromada_et_al_2021 Public

    MATLAB

  2. Clark_et_al_2021 Clark_et_al_2021 Public

    Jupyter Notebook

  3. Ostrem_Loss_et_al_2022 Ostrem_Loss_et_al_2022 Public

    Growth limitation via chemically complex carbohydrates reduces sensitivity of synthetic human gut communities to perturbations

    Jupyter Notebook

  4. Baranwal_et_al_2022 Baranwal_et_al_2022 Public

    PyTorch Implementation of LSTM-based dynamical model for predicting species abundance and metabolite concentrations in a heterogeneous community

    Jupyter Notebook 2 1

  5. Thompson_et_al_2023 Thompson_et_al_2023 Public

    Microbiome Recurrent Neural Network (MiRNN)

    Jupyter Notebook

Repositories

Showing 10 of 13 repositories
  • Sulaiman_et_al_2024_Evolution Public

    Codes for manuscript, "Human gut microbiota interactions shape the long-term growth dynamics and evolutionary adaptations of Clostridioides difficile"

    VenturelliLab/Sulaiman_et_al_2024_Evolution’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 7, 2024
  • Sulaiman_et_al_2024 Public

    gLV parameter estimation for Cdiff communities

    VenturelliLab/Sulaiman_et_al_2024’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 12, 2024
  • DoTA-seq-Paper Public Forked from lanfreem/DoTA-seq-Paper

    Scripts used in DoTA-seq methods paper

    VenturelliLab/DoTA-seq-Paper’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Dec 15, 2023
  • Ostrem_Loss_et_al_2022 Public

    Growth limitation via chemically complex carbohydrates reduces sensitivity of synthetic human gut communities to perturbations

    VenturelliLab/Ostrem_Loss_et_al_2022’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 22, 2023
  • Thompson_et_al_2023 Public

    Microbiome Recurrent Neural Network (MiRNN)

    VenturelliLab/Thompson_et_al_2023’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 20, 2023
  • Baranwal_et_al_2022 Public

    PyTorch Implementation of LSTM-based dynamical model for predicting species abundance and metabolite concentrations in a heterogeneous community

    VenturelliLab/Baranwal_et_al_2022’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Jul 10, 2023
  • Tutorials Public

    Tutorials for programming in Python, model development, and parameter estimation

    VenturelliLab/Tutorials’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 28, 2023
  • Bfragilis-CPS Public Forked from lanfreem/Bfragilis-CPS

    Scripts used in Bfragilis CPS paper

    VenturelliLab/Bfragilis-CPS’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 31, 2022
  • polysaccharide_utilization_BU Public
    VenturelliLab/polysaccharide_utilization_BU’s past year of commit activity
    MATLAB 0 GPL-3.0 0 0 0 Updated Sep 29, 2022
  • Hromada_et_al_2022 Public Forked from SusanHromada/MicrobialInteractionsImpactCdifficileAntibioticResponse

    Microbial Interactions Impact Cdifficile Antibiotic Response

    VenturelliLab/Hromada_et_al_2022’s past year of commit activity
    Python 0 1 0 0 Updated Sep 7, 2022
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