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VascoElbrecht · Sep 17, 2019 · 03c2d1c · 03c2d1c
1 parent 7f3a52a
commit 03c2d1c
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/PrimerMiner/R/Download_GB.R b/PrimerMiner/R/Download_GB.R
@@ -48,7 +48,7 @@ cat("", file=paste(folder_path, taxon[k], "_GB.fasta", sep=""), sep="", append=F
 if(!is.list(search_results)){
 
 message("Using GB_subset = ", GB_subset)
-
+start <-0
 i <- 1
 chunks <- length(search_results)/300
 if (!is.integer(chunks)){chunks <- as.integer(length(search_results)/300)+1}

diff --git a/PrimerMiner/R/batch_down.R b/PrimerMiner/R/batch_down.R
@@ -50,7 +50,7 @@ if(download_and_cluster){
 
 if (Download){
 if (download_bold){Download_BOLD(taxa, folder= subFolderPath, setwd=subFolder)}
-if (download_GB){Download_GB(taxa, folder= subFolderPath, marker=Marker, maxlength= maxlength_GB, custom_query= custom_query_GB, setwd=subFolder)}
+if (download_GB){Download_GB(taxa, folder= subFolderPath, marker=Marker, maxlength= maxlength_GB, custom_query= custom_query_GB, setwd=subFolder, GB_subset=GB_subset)}
 if (download_mt){Download_mito(taxa, folder= subFolderPath, minlength= minlength_mt, maxlength= maxlength_mt, custom_query = custom_query_mt, setwd=subFolder)
 	if (length(list.files(subFolderPath, pattern="mito.gb$"))>0){
 		message(" ")