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UoS-HGIG

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  1. GenePy-1.4 GenePy-1.4 Public

    Latest GenePy version using Ensembl VEP annotation, gnomAD random forest flag. Incorporation of tri-allelic variants *in progress*

    Python 7

  2. GenePy GenePy Public

    GenePy v1.2 a score for the analysis of next generation sequencing data

    Python 2 2

  3. GenePy-2 GenePy-2 Public

    Perl 1 1

  4. peddy peddy Public

    Forked from brentp/peddy

    genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

    Jupyter Notebook

  5. VCF-liftover VCF-liftover Public

    Forked from hmgu-itg/VCF-liftover

    Liftover VCF files

    Shell

  6. SNPRelate SNPRelate Public

    Codes for generating PCA plots from VCF files

    R 1

Repositories

Showing 10 of 12 repositories
  • Genepy_GEL Public
    UoS-HGIG/Genepy_GEL’s past year of commit activity
    Perl 0 0 0 0 Updated Jan 7, 2025
  • GenePy-2 Public
    UoS-HGIG/GenePy-2’s past year of commit activity
    Perl 1 MIT 1 0 0 Updated Jan 7, 2025
  • GenePy_LRSEQ Public

    A gene-based pathogenicity score based on phased variants from long read sequencing

    UoS-HGIG/GenePy_LRSEQ’s past year of commit activity
    Shell 0 0 0 0 Updated Nov 27, 2024
  • GenePy-1.3 Public

    Latest GenePy version compatible with both GRCh38 and GRCh37(hg19)

    UoS-HGIG/GenePy-1.3’s past year of commit activity
    Python 0 2 0 0 Updated Jun 6, 2023
  • GenePy-1.4 Public

    Latest GenePy version using Ensembl VEP annotation, gnomAD random forest flag. Incorporation of tri-allelic variants *in progress*

    UoS-HGIG/GenePy-1.4’s past year of commit activity
    Python 7 0 1 0 Updated Jun 6, 2023
  • WES_multicalling_pipeline_2020 Public
    UoS-HGIG/WES_multicalling_pipeline_2020’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated May 3, 2023
  • WES_2022_QC_pipeline Public
    UoS-HGIG/WES_2022_QC_pipeline’s past year of commit activity
    R 0 0 0 0 Updated Jun 21, 2022
  • GenePy Public

    GenePy v1.2 a score for the analysis of next generation sequencing data

    UoS-HGIG/GenePy’s past year of commit activity
    Python 2 2 2 0 Updated Sep 8, 2021
  • grf Public Forked from grf-labs/grf

    Generalized Random Forests

    UoS-HGIG/grf’s past year of commit activity
    C++ 0 GPL-3.0 260 0 0 Updated Dec 15, 2019
  • SNPRelate Public

    Codes for generating PCA plots from VCF files

    UoS-HGIG/SNPRelate’s past year of commit activity
    R 0 1 0 0 Updated Nov 20, 2018
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