added errorStrategy

UPHL-BioNGS · Jun 26, 2024 · ed4635b · ed4635b
1 parent 3c3ecdb
commit ed4635b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/local/bbduk.nf b/modules/local/bbduk.nf
@@ -3,7 +3,7 @@ process bbduk {
   label         "process_medium"
   publishDir    params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
   container     'staphb/bbtools:39.01'
-  //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
+  errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   time          '10m'
 
   input: