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erinyoung committed Apr 23, 2024
1 parent 6a9f8b8 commit e2bfdf7
Showing 1 changed file with 16 additions and 15 deletions.
31 changes: 16 additions & 15 deletions nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -3,9 +3,10 @@ manifest {
author = 'Erin Young'
homePage = 'https://github.com/UPHL-BioNGS/Grandeur'
mainScript = 'main.nf'
version = '4.1.20240417'
version = '4.2.20240425'
defaultBranch = 'main'
description = 'Grandeur is short-read de novo assembly pipeline with serotyping.'
nextflowVersion = '!>=22.10.1'
}

//########## Setting Profiles ##########
Expand Down Expand Up @@ -85,29 +86,29 @@ process {
maxErrors = '-1'

withLabel:process_single {
cpus = { 1 }
memory = { 6.GB * task.attempt }
time = { 10.m * task.attempt }
cpus = { 1 }
memory = { 4.GB }
time = { 30.m }
}
withLabel:process_low {
cpus = { 2 * task.attempt }
memory = { 12.GB * task.attempt }
time = { 2.h * task.attempt }
cpus = { 2 }
memory = { 12.GB }
time = { 2.h }
}
withLabel:process_medium {
cpus = { 6 * task.attempt }
memory = { 36.GB * task.attempt }
time = { 4.h * task.attempt }
cpus = { 6 }
memory = { 36.GB }
time = { 4.h }
}
withLabel:process_high {
cpus = { 12 * task.attempt }
memory = { 72.GB * task.attempt }
time = { 16.h * task.attempt }
cpus = { 12 }
memory = { 72.GB }
time = { 16.h }
}
withLabel:process_long {
time = { 20.h * task.attempt }
time = { 20.h }
}
withLabel:process_high_memory {
memory = { 200.GB * task.attempt }
memory = { 200.GB }
}
}

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