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UPHL-BioNGS · Jan 16, 2025 · dc11ce3 · dc11ce3
1 parent 3ae3b85
commit dc11ce3
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/subworkflows/local/report.nf b/subworkflows/local/report.nf
@@ -39,5 +39,6 @@ workflow REPORT {
         SUMMARY(for_summary.mix(ch_names).mix(MULTIQC.out.data_folder).collect())
 
     emit:
-        SUMMARY.out.extended_tsv
+        summary  = SUMMARY.out.extended_tsv
+        versions = ch_versions
 }
diff --git a/subworkflows/local/test.nf b/subworkflows/local/test.nf
@@ -10,7 +10,7 @@ workflow TEST {
     ch_versions = Channel.empty()
 
     if ( ! params.sra_accessions.isEmpty()  || ! params.genome_accessions.isEmpty() ) {
-        DOWNLOAD_FASTQ(ch_sra_accessions)
+        DOWNLOAD_FASTQ(ch_sra_accessions.filter())
         ch_versions = ch_versions.mix(DOWNLOAD_FASTQ.out.versions.first())
 
         DOWNLOAD_FASTQ.out.fastq