added errorStrategy

UPHL-BioNGS · Jun 26, 2024 · d46878d · d46878d
1 parent b596fe0
commit d46878d
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/modules/local/mykrobe.nf b/modules/local/mykrobe.nf
@@ -8,7 +8,7 @@ process mykrobe {
   errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
 
   input:
-  tuple val(meta), file(contigs), val(flag)
+  tuple val(meta), file(contigs)
 
   output:
   path "mykrobe/*.csv", emit: collect
@@ -17,7 +17,7 @@ process mykrobe {
   path "versions.yml", emit: versions
 
   when:
-  (task.ext.when == null || task.ext.when) && flag =~ 'found'
+  (task.ext.when == null || task.ext.when)
 
   shell:
   def args   = task.ext.args   ?: ''