uncommented errorStrategy

UPHL-BioNGS · Feb 22, 2024 · c7e0f8c · c7e0f8c
1 parent 60f1752
commit c7e0f8c
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/modules/local/blast.nf b/modules/local/blast.nf
@@ -3,7 +3,7 @@ process blastn {
   label         "process_medium"
   publishDir    params.outdir, mode: 'copy'
   container     'staphb/blast:2.15.0'
-  //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
+  errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   time          '2h'
 
   input:

diff --git a/modules/local/blobtools.nf b/modules/local/blobtools.nf
@@ -4,7 +4,7 @@ process blobtools_create {
   publishDir    params.outdir, mode: 'copy'
   container     'chrishah/blobtools:v1.1.1'
   time          '45m'
-  //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
+  errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
 
   input:
   tuple val(meta), file(contig), file(blastn), file(bam)
@@ -44,7 +44,7 @@ process blobtools_view {
   publishDir    params.outdir, mode: 'copy'
   container     'chrishah/blobtools:v1.1.1'
   time          '10m'
-  //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
+  errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
 
   input:
   tuple val(meta), file(json)
@@ -81,7 +81,7 @@ process blobtools_plot {
   publishDir    params.outdir, mode: 'copy'
   container     'chrishah/blobtools:v1.1.1'
   time          '10m'
-  //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
+  errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
 
   input:
   tuple val(meta), file(json)

diff --git a/modules/local/circulocov.nf b/modules/local/circulocov.nf
@@ -5,7 +5,7 @@ process circulocov {
   publishDir    path: params.outdir, mode: 'copy'
   container     'quay.io/uphl/circulocov:0.1.20240104-2024-02-21'
   time          '30m'
-  //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
+  errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
 
   input:
   tuple val(meta), file(fastqs), file(contigs)