removed flag

UPHL-BioNGS · Jun 26, 2024 · a7e196d · a7e196d
1 parent 6ac636d
commit a7e196d
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/modules/local/elgato.nf b/modules/local/elgato.nf
@@ -7,15 +7,15 @@ process elgato {
   errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
 
   input:
-  tuple val(meta), file(contigs), val(flag)
+  tuple val(meta), file(contigs)
 
   output:
   path "elgato/*/possible_mlsts.txt", emit: collect
   path "logs/${task.process}/*.log" , emit: log
   path "versions.yml"               , emit: versions
 
   when:
-  (task.ext.when == null || task.ext.when) && flag =~ 'found'
+  (task.ext.when == null || task.ext.when)
 
   shell:
   def args   = task.ext.args   ?: ''