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erinyoung committed Apr 24, 2024
1 parent 0252e5b commit a49ba20
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions subworkflows/phylogenetic_analysis.nf
Original file line number Diff line number Diff line change
Expand Up @@ -48,13 +48,13 @@ workflow phylogenetic_analysis {
panaroo(prokka.out.gff.unique().collect())

ch_core = panaroo.out.core_gene_alignment
ch_versions = ch_versions.mix(panaroo.out.versions.first())
ch_versions = ch_versions.mix(panaroo.out.versions)

} else if (params.aligner == 'roary') {
roary(prokka.out.gff.unique().collect())

ch_core = roary.out.core_gene_alignment
ch_versions = ch_versions.mix(roary.out.versions.first())
ch_versions = ch_versions.mix(roary.out.versions)

} else {
ch_core = Channel.empty()
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