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removed versions
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erinyoung committed Mar 12, 2024
1 parent fe6a17e commit 8306e9c
Showing 1 changed file with 1 addition and 7 deletions.
8 changes: 1 addition & 7 deletions modules/local/local.nf
Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,6 @@ process download_sra {
output:
tuple val(SRR), file("reads/${SRR}_{1,2}.fastq.gz"), emit: fastq
path "logs/${task.process}/*.log", emit: log
path "versions.yml", emit: versions

when:
task.ext.when == null || task.ext.when
Expand All @@ -63,11 +62,6 @@ process download_sra {
wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/\${sra:0:6}/0\${sra: -2 }/${SRR}/${SRR}_2.fastq.gz
mv *fastq.gz reads/.
cat <<-END_VERSIONS > versions.yml
"${task.process}":
sratools: \$(fasterq-dump --version 2>&1 | grep -Eo '[0-9.]+')
END_VERSIONS
"""
}

Expand Down Expand Up @@ -284,7 +278,7 @@ process references {
tag "Preparing references"
// no publishDir
label "process_single"
container 'quay.io/uphl/grandeur_ref:20240124'
container 'quay.io/uphl/grandeur_ref:2024-03-07'
time '10m'
errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}

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