added wildcard to pattern

UPHL-BioNGS · Mar 15, 2024 · 55f61bb · 55f61bb
1 parent 113e3ec
commit 55f61bb
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.github/workflows/github_actions.config b/.github/workflows/github_actions.config
@@ -132,7 +132,7 @@ process {
 		errorStrategy = { task.attempt < 2 ? 'retry' : 'terminate'}
 	}
 	withName:panaroo {
-		publishDir = [ path: "grandeur", mode: 'link', pattern: "panaroo/core_gene_alignment.aln"]
+		publishDir = [ path: "grandeur", mode: 'link', pattern: "panaroo/*"]
 		errorStrategy = { task.attempt < 2 ? 'retry' : 'terminate'}
 	}
 	withName:pbptyper {