Merge pull request #306 from UPHL-BioNGS/update-20240312

Update 3.12.20240312
UPHL-BioNGS · Mar 15, 2024 · 311b753 · 311b753
2 parents 6f8f15e + 6eabe30
commit 311b753
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/modules/freyja.nf b/modules/freyja.nf
@@ -3,7 +3,7 @@ process freyja_variants {
   label         "process_medium"
   errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   publishDir    "${params.outdir}", mode: 'copy'
-  container     'staphb/freyja:1.4.9-03_04_2024-00-46-2024-03-05'
+  container     'staphb/freyja:1.4.9-03_12_2024-00-43-2024-03-12'
 
   //#UPHLICA maxForks 10
   //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'
@@ -44,7 +44,7 @@ process freyja_demix {
   label         "process_medium"
   //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   publishDir    "${params.outdir}", mode: 'copy'
-  container     'staphb/freyja:1.4.9-03_04_2024-00-46-2024-03-05'
+  container     'staphb/freyja:1.4.9-03_12_2024-00-43-2024-03-12'
 
 
   //#UPHLICA maxForks 10
@@ -86,7 +86,7 @@ process freyja_boot {
   label         "process_medium"
   //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   publishDir    "${params.outdir}", mode: 'copy'
-  container     'staphb/freyja:1.4.9-03_04_2024-00-46-2024-03-05'
+  container     'staphb/freyja:1.4.9-03_12_2024-00-43-2024-03-12'
 
   //#UPHLICA maxForks 10
   //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'
@@ -125,7 +125,7 @@ process freyja_aggregate {
   tag        "Aggregating results from freyja"
   label      "process_single"
   publishDir "${params.outdir}", mode: 'copy'
-  container  'staphb/freyja:1.4.9-03_04_2024-00-46-2024-03-05'
+  container  'staphb/freyja:1.4.9-03_12_2024-00-43-2024-03-12'
 
   //#UPHLICA maxForks 10
   //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}

diff --git a/modules/nextclade.nf b/modules/nextclade.nf
@@ -2,7 +2,7 @@ process nextclade_dataset {
   tag        "Downloading NextClade Dataset"
   label      "process_medium"
   publishDir "${params.outdir}", mode: 'copy'
-  container  'nextstrain/nextclade:3.3.0'
+  container  'nextstrain/nextclade:3.3.1'
 
   //#UPHLICA maxForks 10
   //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}

diff --git a/nextflow.config b/nextflow.config
@@ -5,7 +5,7 @@ manifest {
   name              = 'Cecret'
   author            = 'Erin Young'
   homePage          = 'https://github.com/UPHL-BioNGS/Cecret'
-  version           = 'v3.12.20240227'
+  version           = 'v3.12.20240312'
   defaultBranch     = 'master'
   recurseSubmodules = false
   description       = 'Reference-based consensus creation'