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erinyoung committed Sep 26, 2023
1 parent 02c0e0d commit 1cda72f
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions modules/artic.nf
Original file line number Diff line number Diff line change
Expand Up @@ -15,8 +15,8 @@ process artic {
tuple val(sample), file(fastq), file(reference), file(bed)

output:
tuple val(sample), file("artic/${sample}.primertrim.sorted.bam"), file("artic/${sample}.primertrim.sorted.bam.bai"), emit: bam
path "consensus/${sample}.consensus.fa", emit: consensus
tuple val(sample), file("artic/${sample}.primertrim.sorted.bam"), file("artic/${sample}.primertrim.sorted.bam.bai"), emit: bam, optional: true
path "consensus/${sample}.consensus.fa", emit: consensus, optional: true
tuple val("artic"), env(artic_version), emit: artic_version
path "artic/${sample}*"
path "logs/${task.process}/${sample}.${workflow.sessionId}.log"
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