Check versions #51
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| name: Check versions | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '30 4 * * TUE' | |
| jobs: | |
| check: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| lfs: true | |
| - name: Checkout LFS objects | |
| run: git lfs checkout | |
| - name: versions | |
| run: | | |
| issue_text="Needing updates: " | |
| workflow_containers=($(grep container modules/* | grep staphb | sort | uniq | grep -v latest | awk '{print $3}' | sed 's/'\''//g')) | |
| for container in ${workflow_containers[@]} | |
| do | |
| base=$(echo $container | cut -f 1 -d ":") | |
| workflow_version=$(echo $container | cut -f 2 -d ":") | |
| docker pull $base:latest | |
| latest_version=$(docker inspect --format '{{ index .Config.Labels "software.version"}}' $base:latest) | |
| if [[ "$latest_version" == "$workflow_version" ]] | |
| then | |
| echo "No version change for $base:$workflow_version" | tee -a versions.txt | |
| else | |
| echo "New version for $base! Upgrade to $latest_version from $workflow_version." | tee -a versions.txt | |
| issue_text="$issue_text<br>- $base from $workflow_version to $latest_version " | |
| fi | |
| done | |
| latest_nextclade_version=$(docker run nextstrain/nextclade:latest nextclade --version | awk '{print $2}') | |
| worfklow_nextclade_version=$(grep container modules/nextclade.nf | cut -f 2 -d ":" | cut -f 1 -d "'" | head -n 1) | |
| if [[ "$latest_nextclade_version" == "$worfklow_nextclade_version" ]] | |
| then | |
| echo "No version change for nextstrain/nextclade:$worfklow_nextclade_version" | tee -a versions.txt | |
| else | |
| echo "New version for nextstrain/nextclade! Upgrade to $latest_nextclade_version from $worfklow_nextclade_version." | tee -a versions.txt | |
| issue_text="$issue_text<br>- nextstrain/nextclade from $worfklow_nextclade_version to $latest_nextclade_version " | |
| fi | |
| latest_nextalign_version=$(docker run nextstrain/nextalign:latest nextalign --version | awk '{print $2}') | |
| worfklow_nextalign_version=$(grep container modules/nextalign.nf | cut -f 2 -d ":" | cut -f 1 -d "'" | head -n 1) | |
| if [[ "$latest_nextalign_version" == "$worfklow_nextalign_version" ]] | |
| then | |
| echo "No version change for nextstrain/nextalign:$worfklow_nextalign_version" | tee -a versions.txt | |
| else | |
| echo "New version for nextstrain/nextalign! Upgrade to $latest_nextalign_version from $worfklow_nextalign_version." | tee -a versions.txt | |
| issue_text="$issue_text<br>- nextstrain/nextalign from $worfklow_nextalign_version to $latest_nextalign_version " | |
| fi | |
| echo $issue_text | |
| cat versions.txt | |
| echo 'ISSUE_TEXT='$issue_text >> $GITHUB_ENV | |
| - name: Create Issue | |
| run: | | |
| gh issue create --title "Version check" --body "$ISSUE_TEXT" --repo $GITHUB_REPOSITORY | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |