[ENH] Refactorisation - Major API upgrade

[arnaudbore]

No description provided.

[codecov-commenter]

Codecov Report

Merging #200 (477f00a) into master (3b773a7) will increase coverage by 9.14%.
The diff coverage is 71.09%.

@@            Coverage Diff             @@
##           master     #200      +/-   ##
==========================================
+ Coverage   67.75%   76.90%   +9.14%     
==========================================
  Files           9       15       +6     
  Lines         673      775     +102     
  Branches      102      109       +7     
==========================================
+ Hits          456      596     +140     
+ Misses        186      147      -39     
- Partials       31       32       +1     

Flag	Coverage Δ
pytest	76.90% <71.09%> (+9.14%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
dcm2bids/utils/logger.py	80.00% <ø> (ø)
dcm2bids/utils/args.py	39.13% <39.13%> (ø)
dcm2bids/utils/tools.py	45.94% <45.94%> (ø)
dcm2bids/cli/dcm2bids_helper.py	62.50% <50.00%> (ø)
dcm2bids/utils/io.py	67.64% <67.64%> (ø)
dcm2bids/utils/utils.py	68.75% <68.75%> (ø)
dcm2bids/cli/dcm2bids.py	77.77% <77.77%> (ø)
dcm2bids/dcm2bids_gen.py	73.72% <84.61%> (ø)
dcm2bids/version.py	87.50% <87.50%> (+41.55%)	⬆️
dcm2bids/cli/dcm2bids_scaffold.py	93.10% <93.10%> (ø)
... and 5 more

[SamGuay]

Made a couple of suggestion that should fix a couple of bugs. Should be good after.