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Error in .Call2 #10

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rajkump opened this issue Apr 3, 2023 · 0 comments
Open

Error in .Call2 #10

rajkump opened this issue Apr 3, 2023 · 0 comments

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@rajkump
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rajkump commented Apr 3, 2023

I am using BSgenome.Hsapiens.UCSC.hg38 genome and I get the following error.

Loading variants...
Reading in vcf file...
Converting chrom name style to style in ref.genome...
Initializing SNV signature output vector...
Removing rows with multiple ALT sequences...
Subsetting for SNVs...
Getting SNV trinucleotide contexts...
Error in .Call2("C_solve_user_SEW", refwidths, start, end, width, translate.negative.coord, :
solving row 1312861: 'allow.nonnarrowing' is FALSE and the supplied start (0) is < 1

Please let me know.

Thanks,
Praveen
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@rajkump