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@UMCUGenetics

UMCU Genetics

Repository for genetics code

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  1. RNASeq-NF RNASeq-NF Public

    RNASeq-NF is an NGS analysis pipeline for RNA expression quantification.

    Nextflow 8 8

  2. NF-IAP NF-IAP Public

    Illumina Analysis Pipeline in Nextflow

    Nextflow 3 5

  3. NextflowModules NextflowModules Public

    UMCU Genetics Nextflow modules

    Nextflow 27 10

Repositories

Showing 10 of 146 repositories
  • GIABEval Public

    Genome-in-a-bottle evaluation tool to determine statistics

    UMCUGenetics/GIABEval’s past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Feb 28, 2025
  • DIMS Public

    Direct Infusion Mass Spectrometry pipeline

    UMCUGenetics/DIMS’s past year of commit activity
    Nextflow 2 MIT 2 11 1 Updated Feb 26, 2025
  • CustomModules Public
    UMCUGenetics/CustomModules’s past year of commit activity
    R 1 MIT 0 0 2 Updated Feb 26, 2025
  • DxNextflowWES Public

    Genome Diagnostics Nextflow WES workflow

    UMCUGenetics/DxNextflowWES’s past year of commit activity
    Nextflow 6 MIT 1 6 0 Updated Feb 25, 2025
  • clarity_epp Public

    Clarity LIMS epp scripts

    UMCUGenetics/clarity_epp’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 21, 2025
  • USEQ_tools Public

    Utility scripts to work with Genologics Clarity LIMS

    UMCUGenetics/USEQ_tools’s past year of commit activity
    Python 2 MIT 0 0 2 Updated Feb 17, 2025
  • AdvancedBioinformaticsCourse Public
    UMCUGenetics/AdvancedBioinformaticsCourse’s past year of commit activity
    5 CC0-1.0 0 0 0 Updated Feb 16, 2025
  • cuplr Public

    Predicting tumor type using WGS derived features

    UMCUGenetics/cuplr’s past year of commit activity
    R 5 GPL-3.0 2 1 0 Updated Feb 13, 2025
  • mutSigExtractor Public

    An R package for extracting mutational signatures from vcf files

    UMCUGenetics/mutSigExtractor’s past year of commit activity
    R 10 GPL-3.0 6 4 0 Updated Feb 13, 2025
  • CHORD Public

    An R package for predicting HR deficiency from mutation contexts

    UMCUGenetics/CHORD’s past year of commit activity
    R 28 GPL-3.0 7 3 0 Updated Feb 13, 2025
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