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more edits to methodology #307

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Oct 21, 2024
Merged

more edits to methodology #307

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d-morrison Oct 7, 2024
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Merge branch 'main' into fix-methodology-3
d-morrison Oct 18, 2024
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5 changes: 4 additions & 1 deletion vignettes/methodology.qmd
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Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@
```{r}
#| fig-cap: "Example log(likelihood) curves"
#| label: fig-loglik
lik_HlyE_IgA <- graph_loglik(

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file=vignettes/methodology.qmd,line=207,col=1,[object_name_linter] Variable and function name style should match snake_case or symbols.
pop_data = xs_data,
curve_params = curves,
noise_params = noise,
Expand All @@ -212,7 +212,7 @@
log_x = TRUE
)

lik_HlyE_IgG <- graph_loglik(

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file=vignettes/methodology.qmd,line=215,col=1,[object_name_linter] Variable and function name style should match snake_case or symbols.
previous_plot = lik_HlyE_IgA,
pop_data = xs_data,
curve_params = curves,
Expand Down Expand Up @@ -339,7 +339,10 @@

::: notes

The derivative of this expression doesn't come out cleanly, so we will use a *numerical method* (specifically, a Newton-type algorithm, implemented by `stats::nlm()`) to find the MLE and corresponding standard error.
The derivative of this expression doesn't come out cleanly,
so we will use a *numerical method*
(specifically, a Newton-type algorithm, implemented by `stats::nlm()`)
to find the MLE and corresponding standard error.

:::

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