Merge pull request #54 from UBC-MDS/update_env

update environment.yml and dockerfile

Dockerfile

@@ -2,13 +2,19 @@ FROM quay.io/jupyter/minimal-notebook:afe30f0c9ad8
 
 COPY conda-linux-64.lock /tmp/conda-linux-64.lock
 
+USER root
+
+# install lmodern for Quarto PDF rendering
+RUN sudo apt update \
+    && sudo apt install -y lmodern
+
+USER $NB_UID
+
+# install packages from conda-linux-64.lock
 RUN mamba update --quiet --file /tmp/conda-linux-64.lock \
     && mamba clean --all -y -f \
     && fix-permissions "${CONDA_DIR}" \
     && fix-permissions "/home/${NB_USER}"
 
-
-#RUN apt-get update && apt-get install -y libicu-dev
 RUN pip install deepchecks==0.18.1
-RUN pip install altair_ally==0.1.1
-
+RUN pip install altair_ally==0.1.1

conda-linux-64.lock

@@ -1,13 +1,16 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 89d78beff324fd5ceb2a6eb41a1176efde7fd4b25f80c34f30f045a97ab62b6d
+# input_hash: ffb059a6e90531091f86893ec54f036dfb1e5e20af3e487b2340305bf52b0d01
 @EXPLICIT
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+https://conda.anaconda.org/conda-forge/linux-64/dart-sass-1.58.3-ha770c72_1.conda#d54982a58cd9be3d00a7efe76ba6f60c
+https://conda.anaconda.org/conda-forge/linux-64/esbuild-0.24.0-ha770c72_0.conda#b2cdfd1d3c62519b913d71f200e7f9ca
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+https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.2-ha770c72_0.conda#8c924f0b7f3e064b1c954a08e7c32fba
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@@ -37,6 +40,7 @@ https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.11-hb9d3cd8_1.co
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+https://conda.anaconda.org/conda-forge/linux-64/deno-1.41.0-hfc7925d_0.conda#8d6e6bd74055bd30c88d3a678395a7e9
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@@ -63,10 +67,12 @@ https://conda.anaconda.org/conda-forge/linux-64/mysql-common-9.0.1-h266115a_2.co
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@@ -102,6 +108,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.7.0-he137b08_1.conda#6
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@@ -110,6 +117,7 @@ https://conda.anaconda.org/conda-forge/linux-64/xorg-libxrender-0.9.11-hb9d3cd8_
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+https://conda.anaconda.org/conda-forge/noarch/asttokens-3.0.0-pyhd8ed1ab_0.conda#454950e9fa3a0c59880de0ac7a6bc8c4
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@@ -160,7 +168,7 @@ https://conda.anaconda.org/conda-forge/linux-64/msgpack-python-1.1.0-py311hd18a3
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-https://conda.anaconda.org/conda-forge/noarch/narwhals-1.14.2-pyhff2d567_0.conda#c7948f818368f181dea8d4865efd8039
+https://conda.anaconda.org/conda-forge/noarch/narwhals-1.15.1-pyhd8ed1ab_0.conda#aae74cdba80bb8c7dac72fd745fb9285
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@@ -182,7 +190,7 @@ https://conda.anaconda.org/conda-forge/noarch/pygments-2.18.0-pyhd8ed1ab_0.conda
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+https://conda.anaconda.org/conda-forge/noarch/python-fastjsonschema-2.21.0-pyhd8ed1ab_0.conda#4c849126120d1b3d61cf0eac8120ea70
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 https://conda.anaconda.org/conda-forge/noarch/cachecontrol-0.14.1-pyhd8ed1ab_0.conda#e2ab0c0094abfe6021c0b03b7a54cbec
 https://conda.anaconda.org/conda-forge/noarch/conda-package-streaming-0.11.0-pyhd8ed1ab_0.conda#bc9533d8616a97551ed144789bf9c1cd
 https://conda.anaconda.org/conda-forge/noarch/ensureconda-1.4.4-pyhd8ed1ab_0.conda#e54a91c3a65491b13c68f7696425bac8
-https://conda.anaconda.org/conda-forge/noarch/httpx-0.27.2-pyhd8ed1ab_0.conda#7e9ac3faeebdbd7b53b462c41891e7f7
-https://conda.anaconda.org/conda-forge/noarch/ipython-8.29.0-pyh707e725_0.conda#56db21d7d51410fcfbfeca3d1a6b4269
+https://conda.anaconda.org/conda-forge/noarch/httpx-0.28.0-pyhd8ed1ab_0.conda#22878824a87f1af2ad48665f9d5bfcc8
+https://conda.anaconda.org/conda-forge/noarch/ipykernel-6.29.5-pyh3099207_0.conda#b40131ab6a36ac2c09b7c57d4d3fbf99
 https://conda.anaconda.org/conda-forge/noarch/isoduration-20.11.0-pyhd8ed1ab_0.tar.bz2#4cb68948e0b8429534380243d063a27a
 https://conda.anaconda.org/conda-forge/noarch/jsonschema-4.23.0-pyhd8ed1ab_0.conda#da304c192ad59975202859b367d0f6a2
 https://conda.anaconda.org/conda-forge/linux-64/matplotlib-base-3.9.2-py311h2b939e6_2.conda#2e8401a7780e33e9ca76034d0ed24c3c
@@ -314,7 +323,6 @@ https://conda.anaconda.org/conda-forge/linux-64/secretstorage-3.3.3-py311h38be06
 https://conda.anaconda.org/conda-forge/noarch/altair-5.5.0-pyhd8ed1ab_0.conda#a36e83a3ca4416a393be9d023f1f9c8d
 https://conda.anaconda.org/conda-forge/noarch/cachecontrol-with-filecache-0.14.1-pyhd8ed1ab_0.conda#7086cfe05f71ea0d9a509b4e3509554d
 https://conda.anaconda.org/conda-forge/noarch/conda-package-handling-2.4.0-pyh7900ff3_0.conda#686fb26b6fd490b533ec580da90b2af8
-https://conda.anaconda.org/conda-forge/noarch/ipykernel-6.29.5-pyh3099207_0.conda#b40131ab6a36ac2c09b7c57d4d3fbf99
 https://conda.anaconda.org/conda-forge/noarch/jsonschema-with-format-nongpl-4.23.0-hd8ed1ab_0.conda#16b37612b3a2fd77f409329e213b530c
 https://conda.anaconda.org/conda-forge/noarch/keyring-25.5.0-pyha804496_0.conda#a36af57a05ceaed6827adc5e4ba81267
 https://conda.anaconda.org/conda-forge/noarch/nbformat-5.10.4-pyhd8ed1ab_0.conda#0b57b5368ab7fc7cdc9e3511fa867214
@@ -323,7 +331,7 @@ https://conda.anaconda.org/conda-forge/linux-64/pyside6-6.8.0.2-py311h9053184_0.
 https://conda.anaconda.org/conda-forge/noarch/conda-lock-2.5.7-pyhd8ed1ab_0.conda#154d0c643be6a9ce6fbe655d007d8e4e
 https://conda.anaconda.org/conda-forge/noarch/jupyter_events-0.10.0-pyhd8ed1ab_0.conda#ed45423c41b3da15ea1df39b1f80c2ca
 https://conda.anaconda.org/conda-forge/linux-64/matplotlib-3.9.2-py311h38be061_2.conda#713b57fc1ebd395598f709a26c2d27fd
-https://conda.anaconda.org/conda-forge/noarch/nbclient-0.10.0-pyhd8ed1ab_0.conda#15b51397e0fe8ea7d7da60d83eb76ebc
+https://conda.anaconda.org/conda-forge/noarch/nbclient-0.10.1-pyhd8ed1ab_0.conda#3ee79082e59a28e1db11e2a9c3bcd85a
 https://conda.anaconda.org/conda-forge/noarch/pandera-0.21.0-hd8ed1ab_0.conda#c927e2e31eb637f37b4fdf778f2dd4dc
 https://conda.anaconda.org/conda-forge/noarch/nbconvert-core-7.16.4-pyhd8ed1ab_1.conda#e2d2abb421c13456a9a9f80272fdf543
 https://conda.anaconda.org/conda-forge/noarch/jupyter_server-2.14.2-pyhd8ed1ab_0.conda#ca23c71f70a7c7935b3d03f0f1a5801d

environment.yml

@@ -17,6 +17,9 @@ dependencies:
   - pandera=0.21.0
   - conda-lock=2.5.7
   - mamba=1.5.11
+  - quarto=1.5.57
+  - click=8.1.7
+  - tabulate=0.9.0
   - pip=24.3
   - pip:
     - altair_ally==0.1.1