-
Notifications
You must be signed in to change notification settings - Fork 34
/
Copy path.gitmodules
69 lines (69 loc) · 3.04 KB
/
.gitmodules
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
[submodule "fusion/tools/star_fusion"]
path = fusion/tools/STAR-fusion
url = https://github.com/STAR-Fusion/STAR-Fusion.git
[submodule "fusion/tools/discasm"]
path = fusion/tools/DISCASM
url = https://github.com/DISCASM/DISCASM.git
[submodule "fusion/tools/gmap_fusion"]
path = fusion/tools/GMAP-fusion
url = https://github.com/GMAP-fusion/GMAP-fusion.git
[submodule "fusion/tools/FusionAnnotator"]
path = fusion/tools/FusionAnnotator
url = https://github.com/FusionAnnotator/FusionAnnotator.git
[submodule "cnv/inferCNV"]
path = cnv/inferCNV
url = https://github.com/broadinstitute/inferCNV
[submodule "fusion/tools/FusionInspector"]
path = fusion/tools/FusionInspector
url = https://github.com/FusionInspector/FusionInspector.git
[submodule "lncrna/SciEDPipeR"]
path = lncrna/SciEDPipeR
url = https://github.com/SciEDPipeR/SciEDPipeR.git
[submodule "genome_guided_transcript_reconstruction/SciEDPipeR"]
path = genome_guided_transcript_reconstruction/SciEDPipeR
url = https://github.com/SciEDPipeR/SciEDPipeR.git
[submodule "expression/SciEDPipeR"]
path = expression/SciEDPipeR
url = https://github.com/SciEDPipeR/SciEDPipeR.git
[submodule "mutation/SciEDPipeR"]
path = mutation/SciEDPipeR
url = https://github.com/SciEDPipeR/SciEDPipeR.git
[submodule "lncrna/slncky"]
path = lncrna/slncky
url = https://github.com/slncky/slncky.git
[submodule "metagenomics/SciEDPipeR"]
path = metagenomics/SciEDPipeR
url = https://github.com/SciEDPipeR/SciEDPipeR.git
[submodule "Trinity_CTAT.wiki"]
path = Trinity_CTAT.wiki
url = https://github.com/NCIP/Trinity_CTAT.wiki.git
[submodule "Fusion-Transcript-Prediction/STAR-Fusion"]
path = Fusion-Transcript-Prediction/STAR-Fusion
url = https://github.com/STAR-Fusion/STAR-Fusion.git
[submodule "Fusion-Transcript-Prediction/TrinityFusion"]
path = Fusion-Transcript-Prediction/TrinityFusion
url = https://github.com/trinityrnaseq/TrinityFusion.git
[submodule "Mutations-via-RNAseq/ctat-mutations"]
path = Mutations-via-RNAseq/ctat-mutations
url = https://github.com/NCIP/ctat-mutations.git
[submodule "Cancer-Splicing-Aberrations/CTAT-SPLICING"]
path = Cancer-Splicing-Aberrations/CTAT-SPLICING
url = https://github.com/NCIP/CTAT-SPLICING.git
[submodule "RNAseq-Assembly/trinityrnaseq"]
path = RNAseq-Assembly/trinityrnaseq
url = https://github.com/trinityrnaseq/trinityrnaseq.git
[submodule "Wiki/Trinity_CTAT.wiki"]
path = Wiki/Trinity_CTAT.wiki
url = https://github.com/NCIP/Trinity_CTAT.wiki.git
[submodule "Tumor-Copy-Number-Aberrations/infercnv"]
path = Tumor-Copy-Number-Aberrations/infercnv
url = https://github.com/broadinstitute/infercnv.git
[submodule "RNAseq-Assembly/DISCASM"]
path = RNAseq-Assembly/DISCASM
url = https://github.com/DISCASM/DISCASM.git
[submodule "Fusion-Transcript-Prediction/FusionInspector"]
path = Fusion-Transcript-Prediction/FusionInspector
url = https://github.com/FusionInspector/FusionInspector.git
[submodule "Virus-Integration-Sites/CTAT-VirusIntegrationFinder"]
path = Virus-Integration-Sites/CTAT-VirusIntegrationFinder
url = https://github.com/broadinstitute/CTAT-VirusIntegrationFinder.git