Fix the warning message in R Mac's cran test (GeomScale#285)

* copy and replace lp_rlp.h * remove re-initialization of eta * update ubuntu version from 18 to 20 in R cran tests * minor improvements (explanatory comments)
TolisChal · Jul 8, 2024 · db3092b · db3092b
1 parent ac68063
commit db3092b
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Showing 4 changed files with 2,466 additions and 6 deletions.
diff --git a/.github/workflows/R-CMD-check-ubuntu.yml b/.github/workflows/R-CMD-check-ubuntu.yml
@@ -22,8 +22,8 @@ jobs:
         config:
          - {os: ubuntu-latest,  r: 'devel'}
          - {os: ubuntu-latest,  r: 'release'}
-         - {os: ubuntu-18.04,   r: 'devel'}
-         - {os: ubuntu-18.04,   r: 'release'}
+         - {os: ubuntu-20.04,   r: 'devel'}
+         - {os: ubuntu-20.04,   r: 'release'}
 
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true

diff --git a/R-proj/src/sample_points.cpp b/R-proj/src/sample_points.cpp
@@ -346,7 +346,7 @@ Rcpp::NumericMatrix sample_points(Rcpp::Nullable<Rcpp::Reference> P,
     random_walks walk;
     ode_solvers solver; // Used only for logconcave sampling
 
-    NT eta;
+    NT eta = 1;
     std::list<Point> randPoints;
     std::pair<Point, NT> InnerBall;
     Point mode(dim);
@@ -410,7 +410,7 @@ Rcpp::NumericMatrix sample_points(Rcpp::Nullable<Rcpp::Reference> P,
         Rcpp::Function negative_logprob = Rcpp::as<Rcpp::List>(distribution)["negative_logprob"];
         Rcpp::Function negative_logprob_gradient = Rcpp::as<Rcpp::List>(distribution)["negative_logprob_gradient"];
 
-        NT L_, m, eta;
+        NT L_, m;
 
         if (Rcpp::as<Rcpp::List>(distribution).containsElementNamed("L_")) {
             L_ = Rcpp::as<NT>(Rcpp::as<Rcpp::List>(distribution)["L_"]);
@@ -459,8 +459,6 @@ Rcpp::NumericMatrix sample_points(Rcpp::Nullable<Rcpp::Reference> P,
 
         functor_defined = false;
 
-        NT eta;
-
         if (Rcpp::as<Rcpp::List>(random_walk).containsElementNamed("step_size")) {
             eta = NT(Rcpp::as<NT>(Rcpp::as<Rcpp::List>(random_walk)["step_size"]));
             if (eta <= NT(0)) {

diff --git a/cran_gen/genCRANpkg.R b/cran_gen/genCRANpkg.R
@@ -42,6 +42,8 @@ dir_lp = paste0(path,"/lpSolveAPI/inst/include")
 h_files = dir(dir_lp, "*.h", ignore.case = TRUE, all.files = TRUE)
 lp_dist = paste0(path,"/external/LPsolve_src/include")
 file.copy(file.path(dir_lp, h_files), lp_dist, recursive=TRUE, overwrite=TRUE)
+# replace the lpsolve header file that issues a warning in mac's cran test
+file.copy(paste0(path,"/external/cmake-files/lpsolve_modified_header_files/lp_rlp.h"), lp_dist, recursive=TRUE, overwrite=TRUE)
 dir_lp = paste0(path,"/lpSolve/src")
 h_files = dir(dir_lp, "*.h", ignore.case = TRUE, all.files = TRUE)
 lp_dist = paste0(path,"/external/LPsolve_src/run_headers")